Wanwipa Vongsangnak

Summary

Affiliation: Chalmers University of Technology
Country: Sweden

Publications

  1. pmc Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae
    Wanwipa Vongsangnak
    Department of Systems Biology, Technical University of Denmark, DK 2800 Lyngby, Denmark
    BMC Genomics 9:245. 2008
  2. doi Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis
    Margarita Salazar
    Department of Chemical and Biological Engineering, Chalmers University of Technology, 412 96, Goteborg, Sweden
    Mol Genet Genomics 282:571-86. 2009
  3. pmc Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications
    Jose Manuel Otero
    Department of Chemical and Biological Engineering, Chalmers University of Technology, SE 41296 Gothenburg, Sweden
    BMC Genomics 11:723. 2010
  4. pmc Revealing the beneficial effect of protease supplementation to high gravity beer fermentations using "-omics" techniques
    Maya P Piddocke
    Center for Microbial Biotechnology, Department of Systems Biology, Technical University of Denmark, DK 2800 Kongens Lyngby, Denmark
    Microb Cell Fact 10:27. 2011
  5. doi Genome-scale metabolic representation of Amycolatopsis balhimycina
    Wanwipa Vongsangnak
    Department of Systems Biology, Technical University of Denmark, Denmark
    Biotechnol Bioeng 109:1798-807. 2012
  6. pmc A trispecies Aspergillus microarray: comparative transcriptomics of three Aspergillus species
    Mikael R Andersen
    Center for Microbial Biotechnology, BioCentrum DTU, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Proc Natl Acad Sci U S A 105:4387-92. 2008

Collaborators

Detail Information

Publications6

  1. pmc Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae
    Wanwipa Vongsangnak
    Department of Systems Biology, Technical University of Denmark, DK 2800 Lyngby, Denmark
    BMC Genomics 9:245. 2008
    ..We enhanced the function assignment by our developed annotation strategy. The resulting better annotation was used to reconstruct the metabolic network leading to a genome scale metabolic model of A. oryzae...
  2. doi Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis
    Margarita Salazar
    Department of Chemical and Biological Engineering, Chalmers University of Technology, 412 96, Goteborg, Sweden
    Mol Genet Genomics 282:571-86. 2009
    ..cerevisiae. Our study clearly demonstrates that cross-species evolutionary comparisons among filamentous fungi, using comparative genomics and transcriptomics, are a powerful tool for uncovering regulatory systems...
  3. pmc Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications
    Jose Manuel Otero
    Department of Chemical and Biological Engineering, Chalmers University of Technology, SE 41296 Gothenburg, Sweden
    BMC Genomics 11:723. 2010
    ..The exact genetic modification or resulting genotype that leads to the improved phenotype is often not identified or understood to enable further metabolic engineering...
  4. pmc Revealing the beneficial effect of protease supplementation to high gravity beer fermentations using "-omics" techniques
    Maya P Piddocke
    Center for Microbial Biotechnology, Department of Systems Biology, Technical University of Denmark, DK 2800 Kongens Lyngby, Denmark
    Microb Cell Fact 10:27. 2011
    ....
  5. doi Genome-scale metabolic representation of Amycolatopsis balhimycina
    Wanwipa Vongsangnak
    Department of Systems Biology, Technical University of Denmark, Denmark
    Biotechnol Bioeng 109:1798-807. 2012
    ..balhimycina serves as a basis for physiological characterization. The model allows a rational design of engineering strategies for increasing balhimycin production in A. balhimycina and glycopeptide production in general...
  6. pmc A trispecies Aspergillus microarray: comparative transcriptomics of three Aspergillus species
    Mikael R Andersen
    Center for Microbial Biotechnology, BioCentrum DTU, Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Proc Natl Acad Sci U S A 105:4387-92. 2008
    ..With this case example, we present a validated tool for transcriptome analysis of three Aspergillus species and a methodology for conducting cross-species evolutionary studies within a genus using comparative transcriptomics...