Agustin Ruiz

Summary

Country: Spain

Publications

  1. ncbi The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease
    Carmen Antunez
    Department of Structural Genomics, Neocodex, Avda, Charles Darwin, Sevilla, s n 41092, Spain
    Genome Med 3:33. 2011
  2. ncbi Interaction between Calpain 5, Peroxisome proliferator-activated receptor-gamma and Peroxisome proliferator-activated receptor-delta genes: a polygenic approach to obesity
    Maria E Saez
    Departamento de Genomica Estructural, Neocodex, C, Charles Darwin 6, Acc A, 41092, Sevilla, Spain
    Cardiovasc Diabetol 7:23. 2008
  3. ncbi WWOX gene is associated with HDL cholesterol and triglyceride levels
    Maria E Saez
    Departamento de Genomica Estructural, Neocodex, 41092 Sevilla, Spain
    BMC Med Genet 11:148. 2010
  4. ncbi Calpain-5 gene variants are associated with diastolic blood pressure and cholesterol levels
    Maria E Saez
    Departamento de Genomica Estructural, Neocodex, Sevilla, Spain
    BMC Med Genet 8:1. 2007
  5. ncbi "Does replication groups scoring reduce false positive rate in SNP interaction discovery? Response"
    Javier Gayan
    Neocodex, Avda, Charles Darwin 6, 41092 Sevilla, Spain
    BMC Genomics 11:403. 2010
  6. ncbi Genetic structure of the Spanish population
    Javier Gayan
    Department of Structural Genomics, Neocodex, Sevilla, Spain
    BMC Genomics 11:326. 2010
  7. ncbi A method for detecting epistasis in genome-wide studies using case-control multi-locus association analysis
    Javier Gayan
    Neocodex, Avda, Charles Darwin 6, ACC, A, 41092 Sevilla, Spain
    BMC Genomics 9:360. 2008
  8. ncbi An entropy test for single-locus genetic association analysis
    Manuel Ruiz-Marín
    Department of Quantitative Methods, Technical University of Cartagena, Paseo Alfonso XIII, 50, 30203, Cartagena, Spain
    BMC Genet 11:19. 2010
  9. ncbi Methylation alterations are not a major cause of PTTG1 misregulation
    Manuel Hidalgo
    Service of General Surgery B, Hospital Universitario 12 de Octubre, Madrid, 28041, Spain
    BMC Cancer 8:110. 2008
  10. ncbi Association of NOS3 gene with metabolic syndrome in hypertensive patients
    Maria Luisa Fernandez
    Servicio de Medicina Interna, Hospital de Valme, Seville, Spain
    Thromb Haemost 92:413-8. 2004

Collaborators

  • Alejandro Gonzalez
  • Maria E Saez
  • Jose Luis Royo
  • Antonio Gonzalez-Perez
  • Luis Manzano
  • Jose Miguel Carrasco
  • Manuel Hidalgo
  • Elena Sanchez
  • A Ramos Martínez
  • Francisco Jesus Moron
  • Javier Gayan
  • Reposo Ramirez-Lorca
  • Luis Miguel Real
  • Manuel Serrano-Rios
  • Jose Jorge Galan
  • Antonio Grilo
  • Jose J Galan
  • Maria Luisa Fernandez
  • Carmen Antunez
  • Enrique Vazquez
  • Concha Moreno-Rey
  • Juan Velasco
  • Manuel Ruiz-Marín
  • Juan Luis Susillo-González
  • Alejandro Romo-Astorga
  • Maria Teresa Martinez-Larrad
  • Eva Molero
  • Rosario González-Mancha
  • Luis M Real
  • Francisco J Moron
  • Reyes Gutierrez-Tous
  • Carmen Couto
  • Maria Angeles Gonzalez
  • Laura Vivancos-Moreau
  • Isabel Hernandez
  • Georgina Vinyes
  • Begoña Martínez-Herrada
  • Oscar L Lopez
  • Blanca Garcia
  • Anna Espinosa
  • Juan Marin
  • Alejandro Romo
  • Irene Blanca
  • Fuensanta Noguera-Perea
  • Agustina Legaz-García
  • Sandra Castaño
  • Lluis Tarraga
  • Salvadora Manzanares
  • Asunción Lafuente
  • Ana Mauleon
  • Jesus Lopez-Arrieta
  • Montserrat Alegret
  • Merce Boada
  • Susana Ruiz
  • James T Becker
  • Maitée Rosende-Roca
  • Martirio Antequera-Torres
  • José Antonio García Cordoba
  • María Dolores Ochoa
  • M Carmen Rivero
  • Mercedes Reina
  • Rocío Pascual
  • Carina Zabena
  • Marta Gutiérrez
  • Mariano Matilla-García
  • Carolina Ochoa
  • Ana Salinas
  • Luis Iglesias Pérez
  • Fernando Bermudo
  • José Andrés Moreno Nogueira
  • Manuel Hidalgo Pascual
  • Carmen Crespo
  • Antonio Quintas
  • Maria Jose Martinez-Calatrava
  • Javier Fresneda
  • Jose Saban-Ruiz
  • Francisco Javier Serrano-Hernando
  • Rosario Fernandez-Parrilla
  • Vicente Perez-Gonzalez
  • Jose Luis Gonzalez-Sanchez
  • Guillermo Moñux
  • Manuel Beltran
  • Lluis Bassas
  • Ana Segura
  • Luis Martinez-Pineiro
  • Belen Buch
  • Natalio Cruz
  • Rocio Ruiz
  • Antonio Ramos
  • Jose Maria Rivera

Detail Information

Publications21

  1. ncbi The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease
    Carmen Antunez
    Department of Structural Genomics, Neocodex, Avda, Charles Darwin, Sevilla, s n 41092, Spain
    Genome Med 3:33. 2011
    ..In order to identify novel loci associated with Alzheimer's disease (AD), we conducted a genome-wide association study (GWAS) in the Spanish population...
  2. ncbi Interaction between Calpain 5, Peroxisome proliferator-activated receptor-gamma and Peroxisome proliferator-activated receptor-delta genes: a polygenic approach to obesity
    Maria E Saez
    Departamento de Genomica Estructural, Neocodex, C, Charles Darwin 6, Acc A, 41092, Sevilla, Spain
    Cardiovasc Diabetol 7:23. 2008
    ..Obesity is a multifactorial disorder, that is, a disease determined by the combined effect of genes and environment. In this context, polygenic approaches are needed...
  3. ncbi WWOX gene is associated with HDL cholesterol and triglyceride levels
    Maria E Saez
    Departamento de Genomica Estructural, Neocodex, 41092 Sevilla, Spain
    BMC Med Genet 11:148. 2010
    ..This gene is located at chromosome 16q23, a region previously linked to familial combined hyperlipidemia (FCHL) and HDL. Our objective is to perform a genetic association analysis at the WWOX gene region with HDL, TG and TG/HDL ratio...
  4. ncbi Calpain-5 gene variants are associated with diastolic blood pressure and cholesterol levels
    Maria E Saez
    Departamento de Genomica Estructural, Neocodex, Sevilla, Spain
    BMC Med Genet 8:1. 2007
    ..In this new study, we have analysed the association of four CAPN5 gene variants(rs948976A>G, rs4945140G>A, rs2233546C>T and rs2233549G>A) with several cardiovascular risk factors related to metabolic syndrome in general population...
  5. ncbi "Does replication groups scoring reduce false positive rate in SNP interaction discovery? Response"
    Javier Gayan
    Neocodex, Avda, Charles Darwin 6, 41092 Sevilla, Spain
    BMC Genomics 11:403. 2010
    ..A recent article has claimed that the use of multiple replication groups (as implemented in HFCC) does not reduce the false positive rate, and we hereby try to clarify these issues...
  6. ncbi Genetic structure of the Spanish population
    Javier Gayan
    Department of Structural Genomics, Neocodex, Sevilla, Spain
    BMC Genomics 11:326. 2010
    ..Genetic admixture is a common caveat for genetic association analysis. Therefore, it is important to characterize the genetic structure of the population under study to control for this kind of potential bias...
  7. ncbi A method for detecting epistasis in genome-wide studies using case-control multi-locus association analysis
    Javier Gayan
    Neocodex, Avda, Charles Darwin 6, ACC, A, 41092 Sevilla, Spain
    BMC Genomics 9:360. 2008
    ..Some of these genetic effects may interact in complex ways, proving undetectable by current single-locus methodology...
  8. ncbi An entropy test for single-locus genetic association analysis
    Manuel Ruiz-Marín
    Department of Quantitative Methods, Technical University of Cartagena, Paseo Alfonso XIII, 50, 30203, Cartagena, Spain
    BMC Genet 11:19. 2010
    ..The identification of these small-effect contributing factors is still a demanding task. Clearly, there is a need for more powerful tests of genetic association, and especially for the identification of rare effects..
  9. ncbi Methylation alterations are not a major cause of PTTG1 misregulation
    Manuel Hidalgo
    Service of General Surgery B, Hospital Universitario 12 de Octubre, Madrid, 28041, Spain
    BMC Cancer 8:110. 2008
    ..Despite the clinical relevance and the increasing molecular characterization of PTTG1, the reason for its up-regulation remains unclear...
  10. ncbi Association of NOS3 gene with metabolic syndrome in hypertensive patients
    Maria Luisa Fernandez
    Servicio de Medicina Interna, Hospital de Valme, Seville, Spain
    Thromb Haemost 92:413-8. 2004
    ..011). These data suggest a role of the NOS3 gene in the pathogenesis of metabolic syndrome in hypertensive patients...
  11. ncbi Genetic analysis of CAV1 gene in hypertension and metabolic syndrome
    Antonio Grilo
    Servicio de Medicina Interna, Hospital de Valme, Sevilla, Spain
    Thromb Haemost 95:696-701. 2006
    ..Moreover, it was a genetic protection factor against MS in hypertensive patients. In addition, we found no evidence of gene-gene interaction between NOS3 and CAV1 genes with regard to that phenotype...
  12. ncbi Pharmacogenetics of controlled ovarian hyperstimulation: time to corroborate the clinical utility of FSH receptor genetic markers
    Francisco Jesus Moron
    Department of Structural Genomics, Neocodex, Calle Charles Darwin sn, Parque, Científico y Tecnológico Isla de la Cartuja, 41092, Seville, Spain
    Pharmacogenomics 11:1613-8. 2010
    ....
  13. ncbi Pyrosequencing protocol using a universal biotinylated primer for mutation detection and SNP genotyping
    Jose Luis Royo
    Departamento de Genomica Estructural, Neocodex SL, Avda Charles Darwin 6, Acc A, 41092 Sevilla, Spain
    Nat Protoc 2:1734-9. 2007
    ..Once the correct primer stoichiometry has been determined, the assay takes around 2 h for PCR amplification, followed by 15-20 min (per plate) to obtain the genotypes...
  14. ncbi Association analysis of urotensin II gene (UTS2) and flanking regions with biochemical parameters related to insulin resistance
    Maria E Saez
    Department of Structural Genomics, Neocodex, Sevilla, Spain
    PLoS ONE 6:e19327. 2011
    ..UII exerts a broad spectrum of actions in several systems such as vascular cell, heart muscle or pancreas, where it inhibits insulin release...
  15. ncbi Pyrosequencing protocol requiring a unique biotinylated primer
    Jose Luis Royo
    Departamento de Genomica Estructural, Neocodex SL, Sevilla, Spain
    Clin Chem Lab Med 44:435-41. 2006
    ..Pyrosequencing is a versatile technique allowing an easy 96-well typing format. However, every polymorphism requires a specific labeled primer to generate a single-stranded DNA fragment containing the region of interest...
  16. ncbi Sex and body mass index specific regulation of blood pressure by CYP19A1 gene variants
    Reposo Ramirez-Lorca
    Departamento de Genomica Estructural, Neocodex, Parque Tecnológico Isla de la Cartuja, Sevilla, Spain
    Hypertension 50:884-90. 2007
    ..This effect is dependent on BMI and independent of menopause status, suggesting that this action is mainly driven by aromatase activity in fat tissue...
  17. ncbi The therapeutic potential of the calpain family: new aspects
    Maria E Saez
    Department of Structural Genomics, Neocodex, Centro de Negocios Charles Darwin s n, Isla de la Cartuja, 41092 Sevilla, Spain
    Drug Discov Today 11:917-23. 2006
    ..g. Parkinson's disease and Duchenne muscular dystrophy). Conversely, calpain activators could be a useful approach for those diseases where reduced calpain activity has been observed, such as type 2 diabetes or metabolic syndrome...
  18. ncbi The CAPN10 gene is associated with insulin resistance phenotypes in the Spanish population
    Maria E Saez
    Neocodex, Departamento de Genomica Estructural, Seville, Spain
    PLoS ONE 3:e2953. 2008
    ..Our results suggest that CAPN10 gene is associated with insulin resistance phenotypes in the Spanish population...
  19. ncbi Multilocus analyses of estrogen-related genes reveal involvement of the ESR1 gene in male infertility and the polygenic nature of the pathology
    Jose J Galan
    Department of Structural Genomics, Neocodex, Seville, Spain
    Fertil Steril 84:910-8. 2005
    ..To examine whether polymorphisms within the ESR1, FSHR, ESR2, CYP19A1, and NRIP1 genes are susceptibility factors for human male idiopathic infertility and to test the joint effects of these genes on male reproductive function...
  20. ncbi Analysis of the ERalpha germline PvuII marker in breast cancer risk
    Rosario González-Mancha
    Medical Oncology Service, Hospital Virgen del Rocio, Seville, Spain
    Med Sci Monit 14:CR136-43. 2008
    ..Variation in the estrogen receptor gene PvuII has been associated with an increased risk of developing breast cancer. However, some studies suggest that its effect might be constrained to a definite subgroup of patients...
  21. ncbi Controlled ovarian hyperstimulation pharmacogenetics: a simplified model to genetically dissect estrogen-related diseases
    Francisco Jesus Moron
    Parque Científico y Tecnológico Isla de la Cartuja, Departamento de Genomica Estructural, Neocodex, C Charles Darwin sn, 41092 Sevilla, Spain
    Pharmacogenomics 8:775-85. 2007
    ..The theory that estrogen-related diseases may share some risk factors with controlled ovarian hyperstimulation efficacy, and side effects linked to genetic markers, is discussed...