Angel Rubio

Summary

Country: Spain

Publications

  1. doi request reprint Joint analysis of miRNA and mRNA expression data
    Ander Muniategui
    CEIT, University of Navarra, San Sebastian, Spain
    Brief Bioinform 14:263-78. 2013
  2. pmc Getting DNA copy numbers without control samples
    Maria Ortiz-Estevez
    Group of Bioinformatics, CEIT and TECNUN, University of Navarra, San Sebastian, Spain
    Algorithms Mol Biol 7:19. 2012
  3. pmc SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays
    Miguel A Anton
    CEIT and TECNUN, University of Navarra, San Sebastian, Spain
    Genome Biol 9:R46. 2008
  4. pmc Development of a novel splice array platform and its application in the identification of alternative splice variants in lung cancer
    Ruben Pio
    Division of Oncology, Center for Applied Medical Research, Pamplona, Spain
    BMC Genomics 11:352. 2010
  5. pmc Improvements to previous algorithms to predict gene structure and isoform concentrations using Affymetrix Exon arrays
    Miguel A Anton
    CEIT and TECNUN, University of Navarra, San Sebastian, Spain
    BMC Bioinformatics 11:578. 2010
  6. doi request reprint Integrating tracer-based metabolomics data and metabolic fluxes in a linear fashion via Elementary Carbon Modes
    Jon Pey
    CEIT and TECNUN, University of Navarra, Manuel de Lardizabal 15, 20018 San Sebastian, Spain
    Metab Eng 14:344-53. 2012
  7. pmc Quantification of miRNA-mRNA interactions
    Ander Muniategui
    Group of Bioinformatics, CEIT and TECNUN, University of Navarra, San Sebastian, Spain
    PLoS ONE 7:e30766. 2012
  8. pmc CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation
    Maria Ortiz-Estevez
    CEIT and TECNUN, University of Navarra, 20018 San Sebastian, Spain
    Bioinformatics 28:1793-4. 2012
  9. doi request reprint Do elementary flux modes combine linearly at the "atomic" level?: integrating tracer-based metabolomics data and elementary flux modes
    Jon Pey
    CEIT and TECNUN, University of Navarra, Manuel de Lardizabal, San Sebastian, Spain
    Biosystems 105:140-6. 2011

Collaborators

Detail Information

Publications9

  1. doi request reprint Joint analysis of miRNA and mRNA expression data
    Ander Muniategui
    CEIT, University of Navarra, San Sebastian, Spain
    Brief Bioinform 14:263-78. 2013
    ..Here, we review these methods that combine both expression and sequence-based putative targets to predict miRNA targets...
  2. pmc Getting DNA copy numbers without control samples
    Maria Ortiz-Estevez
    Group of Bioinformatics, CEIT and TECNUN, University of Navarra, San Sebastian, Spain
    Algorithms Mol Biol 7:19. 2012
    ..abstract:..
  3. pmc SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays
    Miguel A Anton
    CEIT and TECNUN, University of Navarra, San Sebastian, Spain
    Genome Biol 9:R46. 2008
    ..The results presented here show its robustness and accuracy for real and simulated data...
  4. pmc Development of a novel splice array platform and its application in the identification of alternative splice variants in lung cancer
    Ruben Pio
    Division of Oncology, Center for Applied Medical Research, Pamplona, Spain
    BMC Genomics 11:352. 2010
    ..In this study, a novel splice array approach was developed, including the design of a high-density oligonucleotide array, a labeling procedure, and an algorithm to identify splice events...
  5. pmc Improvements to previous algorithms to predict gene structure and isoform concentrations using Affymetrix Exon arrays
    Miguel A Anton
    CEIT and TECNUN, University of Navarra, San Sebastian, Spain
    BMC Bioinformatics 11:578. 2010
    ..In addition, gene structure prediction, i.e., the correspondence between probes and novel isoforms, is a field which is still unexplored...
  6. doi request reprint Integrating tracer-based metabolomics data and metabolic fluxes in a linear fashion via Elementary Carbon Modes
    Jon Pey
    CEIT and TECNUN, University of Navarra, Manuel de Lardizabal 15, 20018 San Sebastian, Spain
    Metab Eng 14:344-53. 2012
    ..Finally, as linearity is the hallmark of our approach, its importance is discussed at a methodological, computational and theoretical level and illustrated with a practical application in the field of Isotope Labeling Experiments...
  7. pmc Quantification of miRNA-mRNA interactions
    Ander Muniategui
    Group of Bioinformatics, CEIT and TECNUN, University of Navarra, San Sebastian, Spain
    PLoS ONE 7:e30766. 2012
    ..This is not the case using other algorithms.TaLasso is available as Matlab or R code. There is also a web-based tool for human miRNAs at http://talasso.cnb.csic.es/...
  8. pmc CalMaTe: a method and software to improve allele-specific copy number of SNP arrays for downstream segmentation
    Maria Ortiz-Estevez
    CEIT and TECNUN, University of Navarra, 20018 San Sebastian, Spain
    Bioinformatics 28:1793-4. 2012
    ..CalMaTe applies to any ASCNs regardless of preprocessing method and microarray technology, e.g. Affymetrix and Illumina...
  9. doi request reprint Do elementary flux modes combine linearly at the "atomic" level?: integrating tracer-based metabolomics data and elementary flux modes
    Jon Pey
    CEIT and TECNUN, University of Navarra, Manuel de Lardizabal, San Sebastian, Spain
    Biosystems 105:140-6. 2011
    ..As a result of our analysis, we concluded that in general the concept of EFMs needs to be redefined at the atomic level for the modeling of ILEs. For this purpose, the concept of Elementary Carbon Modes (ECMs) is introduced...