Marina Marcet-Houben

Summary

Affiliation: Center for Genomic Regulation
Country: Spain

Publications

  1. ncbi Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence
    Marina Marcet-Houben
    Comparative Genomics, Centre for Genomics Regulation, 08003 Barcelona, Spain
    BMC Evol Biol 9:295. 2009
  2. ncbi TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees
    Marina Marcet-Houben
    Centre for Genomic Regulation, UPF, Doctor Aiguader 88, 08003 Barcelona, Spain
    Nucleic Acids Res 39:e66. 2011
  3. ncbi Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
    Salvador Capella-Gutierrez
    Bioinformatics and Genomics Programme, Centre for Genomic Regulation CRG and UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain
    BMC Biol 10:47. 2012
  4. ncbi PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions
    Jaime Huerta-Cepas
    Bioinformatics and Genomics Programme, Centre de Regulacio Genomica, 08003 Barcelona, Spain
    Nucleic Acids Res 39:D556-60. 2011

Collaborators

Detail Information

Publications4

  1. ncbi Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence
    Marina Marcet-Houben
    Comparative Genomics, Centre for Genomics Regulation, 08003 Barcelona, Spain
    BMC Evol Biol 9:295. 2009
    ..To identify the main mechanisms behind the evolution of respiratory pathways, we conducted a phylogenomics survey of oxidative phosphorylation components in the genomes of sixty fungal species...
  2. ncbi TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees
    Marina Marcet-Houben
    Centre for Genomic Regulation, UPF, Doctor Aiguader 88, 08003 Barcelona, Spain
    Nucleic Acids Res 39:e66. 2011
    ..In addition treeKO, implements the possibility of computing phylome support values, and reconciliation-based measures such as the number of inferred duplication and loss events...
  3. ncbi Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
    Salvador Capella-Gutierrez
    Bioinformatics and Genomics Programme, Centre for Genomic Regulation CRG and UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain
    BMC Biol 10:47. 2012
    ..Due to the presence of accelerated evolutionary rates, phylogenetic analyses involving microsporidia are prone to methodological artifacts, such as long-branch attraction, especially when taxon sampling is limited...
  4. ncbi PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions
    Jaime Huerta-Cepas
    Bioinformatics and Genomics Programme, Centre de Regulacio Genomica, 08003 Barcelona, Spain
    Nucleic Acids Res 39:D556-60. 2011
    ..Finally, PhylomeDB is currently being used by several genome sequencing projects that couple the genome annotation process with the reconstruction of the corresponding phylome, a strategy that provides relevant evolutionary insights...