Marina Marcet-Houben

Summary

Affiliation: Center for Genomic Regulation
Country: Spain

Publications

  1. pmc Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus
    Marina Marcet-Houben
    Centre for Genomic Regulation, Barcelona, Spain
    BMC Genomics 13:646. 2012
  2. pmc Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence
    Marina Marcet-Houben
    Comparative Genomics, Centre for Genomics Regulation, 08003 Barcelona, Spain
    BMC Evol Biol 9:295. 2009
  3. doi request reprint PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome
    Jaime Huerta-Cepas
    Bioinformatics and Genomics Programme, Centre for Genomic Regulation CRG, Dr Aiguader, 88 08003 Barcelona, Spain, Universitat Pompeu Fabra UPF, 08003 Barcelona, Spain and Institució Catalana de Recerca i Estudis Avançats ICREA, Pg Lluis Companys 23, 08010 Barcelona, Spain
    Nucleic Acids Res 42:D897-902. 2014
  4. pmc TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees
    Marina Marcet-Houben
    Centre for Genomic Regulation, UPF, Doctor Aiguader 88, 08003 Barcelona, Spain
    Nucleic Acids Res 39:e66. 2011
  5. pmc PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions
    Jaime Huerta-Cepas
    Bioinformatics and Genomics Programme, Centre de Regulacio Genomica, 08003 Barcelona, Spain
    Nucleic Acids Res 39:D556-60. 2011
  6. pmc Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
    Salvador Capella-Gutierrez
    Bioinformatics and Genomics Programme, Centre for Genomic Regulation CRG and UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain
    BMC Biol 10:47. 2012
  7. doi request reprint Acquisition of prokaryotic genes by fungal genomes
    Marina Marcet-Houben
    Bioinformatics and Genomics Programme, Centre for Genomic Regulation, Doctor Aiguader, 88 08003 Barcelona, Spain
    Trends Genet 26:5-8. 2010
  8. pmc Comparative genomics of emerging pathogens in the Candida glabrata clade
    Toni Gabaldón
    Bioinformatics and Genomics Programme, Centre for Genomic Regulation CRG and UPF, Doctor Aiguader, 88, Barcelona, 08003, Spain
    BMC Genomics 14:623. 2013

Detail Information

Publications8

  1. pmc Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus
    Marina Marcet-Houben
    Centre for Genomic Regulation, Barcelona, Spain
    BMC Genomics 13:646. 2012
    ..digitatum strains that differ in their antifungal resistance traits have been sequenced and compared with those of 28 other Pezizomycotina...
  2. pmc Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence
    Marina Marcet-Houben
    Comparative Genomics, Centre for Genomics Regulation, 08003 Barcelona, Spain
    BMC Evol Biol 9:295. 2009
    ..To identify the main mechanisms behind the evolution of respiratory pathways, we conducted a phylogenomics survey of oxidative phosphorylation components in the genomes of sixty fungal species...
  3. doi request reprint PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome
    Jaime Huerta-Cepas
    Bioinformatics and Genomics Programme, Centre for Genomic Regulation CRG, Dr Aiguader, 88 08003 Barcelona, Spain, Universitat Pompeu Fabra UPF, 08003 Barcelona, Spain and Institució Catalana de Recerca i Estudis Avançats ICREA, Pg Lluis Companys 23, 08010 Barcelona, Spain
    Nucleic Acids Res 42:D897-902. 2014
    ....
  4. pmc TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees
    Marina Marcet-Houben
    Centre for Genomic Regulation, UPF, Doctor Aiguader 88, 08003 Barcelona, Spain
    Nucleic Acids Res 39:e66. 2011
    ..In addition treeKO, implements the possibility of computing phylome support values, and reconciliation-based measures such as the number of inferred duplication and loss events...
  5. pmc PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions
    Jaime Huerta-Cepas
    Bioinformatics and Genomics Programme, Centre de Regulacio Genomica, 08003 Barcelona, Spain
    Nucleic Acids Res 39:D556-60. 2011
    ..Finally, PhylomeDB is currently being used by several genome sequencing projects that couple the genome annotation process with the reconstruction of the corresponding phylome, a strategy that provides relevant evolutionary insights...
  6. pmc Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
    Salvador Capella-Gutierrez
    Bioinformatics and Genomics Programme, Centre for Genomic Regulation CRG and UPF, Doctor Aiguader, 88, 08003 Barcelona, Spain
    BMC Biol 10:47. 2012
    ..Due to the presence of accelerated evolutionary rates, phylogenetic analyses involving microsporidia are prone to methodological artifacts, such as long-branch attraction, especially when taxon sampling is limited...
  7. doi request reprint Acquisition of prokaryotic genes by fungal genomes
    Marina Marcet-Houben
    Bioinformatics and Genomics Programme, Centre for Genomic Regulation, Doctor Aiguader, 88 08003 Barcelona, Spain
    Trends Genet 26:5-8. 2010
    ..Transferred genes included bacterial arsenite reductase, catalase, different racemases and peptidoglycan metabolism enzymes. Our results suggest an important role for HGT in fungal evolution...
  8. pmc Comparative genomics of emerging pathogens in the Candida glabrata clade
    Toni Gabaldón
    Bioinformatics and Genomics Programme, Centre for Genomic Regulation CRG and UPF, Doctor Aiguader, 88, Barcelona, 08003, Spain
    BMC Genomics 14:623. 2013
    ..bracarensis. To gain insight into the genomic changes underlying the emergence of virulence, we sequenced the genomes of these two, and three other non-pathogenic Nakaseomyces, and compared them to other sequenced yeasts...