Joaquin Canizares

Summary

Affiliation: Camino de Vera
Country: Spain

Publications

  1. ncbi ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using next generation sequence
    Jose M Blanca
    Instituto de Conservacion y Mejora de la Agrodiversidad Valenciana COMAV, Universidad Politecnica de Valencia, Camino de Vera s n, Valencia, Spain
    BMC Genomics 12:285. 2011
  2. ncbi An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.)
    Albert Mascarell-Creus
    Molecular Genetics Department, Centre for Research in Agricultural Genomics CRAG CSIC IRTA UAB, Barcelona 08034, Spain
    BMC Genomics 10:467. 2009
  3. ncbi The transcriptome of Spodoptera exigua larvae exposed to different types of microbes
    Laura Pascual
    Instituto de Conservacion y Mejora de la Agrodiversidad Valenciana COMAV, Universidad Politecnica de Valencia, Camino de Vera s n, Valencia, Spain
    Insect Biochem Mol Biol 42:557-70. 2012
  4. ncbi Transcriptome sequencing for SNP discovery across Cucumis melo
    José Blanca
    Institute for the Conservation and Breeding of Agricultural Biodiversity COMAV UPV, Universitat Politècnica de València, Camino de Vera s n, 46022, Valencia, Spain
    BMC Genomics 13:280. 2012
  5. ncbi Variation revealed by SNP genotyping and morphology provides insight into the origin of the tomato
    José Blanca
    Institute for the Conservation and Improvement of Agricultural Biodiversity, Polytechnic University of Valencia, Camino de Vera, Valencia, Spain
    PLoS ONE 7:e48198. 2012
  6. ncbi Transcriptomic analysis of tomato carpel development reveals alterations in ethylene and gibberellin synthesis during pat3/pat4 parthenocarpic fruit set
    Laura Pascual
    Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universidad Politecnica de Valencia, Camino de Vera s n, 46022 Valencia, Spain
    BMC Plant Biol 9:67. 2009
  7. ncbi EcoTILLING in Capsicum species: searching for new virus resistances
    Vicente P Ibiza
    Instituto de Conservacion y Mejora de la Agrodiversidad Valenciana COMAV, Universidad Politecnica de Valencia, 8E CPI, Camino de Vera s n, 46022 Valencia, Spain
    BMC Genomics 11:631. 2010
  8. ncbi Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)
    José Blanca
    Institute for the Conservation and Breeding of Agricultural Biodiversity, Universidad Politécnica de Valencia COMAV UPV, Camino de Vera s n, 46022 Valencia, Spain
    BMC Genomics 12:104. 2011
  9. ncbi AFLP and DNA sequence variation in an Andean domesticate, pepino (Solanum muricatum, Solanaceae): implications for evolution and domestication
    Jose M Blanca
    Instituto para la Conservación y Mejora de la Agrodiversidad Valenciana, Universidad Politecnica de Valencia, Camino de Vera 14, 46022 Valencia, Spain
    Am J Bot 94:1219-29. 2007

Collaborators

  • Laura Pascual
  • Salvador Herrero
  • Heiko Vogel
  • José Blanca
  • Fernando Nuez
  • Jose M Blanca
  • Cristina Roig
  • Belén Picó
  • Pello Ziarsolo
  • Vicente P Ibiza
  • Albert Mascarell-Creus
  • Cristina Esteras
  • Maria Jose Diez
  • Daniel Perez
  • Laura Cordero
  • Carmen Collado
  • Alida Ballester
  • Victoria Fernã Ndez-Pedrosa
  • Raquel Rodrã Guez de Pablos
  • Peio Ziarsolo
  • Montserrat Saladie
  • Pere Puigdomenech
  • Jordi Garcia-Mas
  • Daniel Gonzalez-Ibeas
  • Josep Vilarrasa-Blasi
  • Santiago Mora-Garcia
  • Wim Deleu
  • Nuria Lopez-Bigas
  • Ana I Caño-Delgado
  • Belén Picó-Silvent
  • Miguel A Aranda
  • Elena Zuriaga
  • Jaime Prohens
  • Gregory J Anderson

Detail Information

Publications9

  1. ncbi ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using next generation sequence
    Jose M Blanca
    Instituto de Conservacion y Mejora de la Agrodiversidad Valenciana COMAV, Universidad Politecnica de Valencia, Camino de Vera s n, Valencia, Spain
    BMC Genomics 12:285. 2011
    ..However, this abundance of sequences and polymorphisms creates new software needs. To fulfill these needs, we have developed a powerful, yet easy-to-use application...
  2. ncbi An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.)
    Albert Mascarell-Creus
    Molecular Genetics Department, Centre for Research in Agricultural Genomics CRAG CSIC IRTA UAB, Barcelona 08034, Spain
    BMC Genomics 10:467. 2009
    ..However, the unprecedented existence of a transcriptomic approaches in melon, highlight the importance of designing new tools for high-throughput analysis of gene expression...
  3. ncbi The transcriptome of Spodoptera exigua larvae exposed to different types of microbes
    Laura Pascual
    Instituto de Conservacion y Mejora de la Agrodiversidad Valenciana COMAV, Universidad Politecnica de Valencia, Camino de Vera s n, Valencia, Spain
    Insect Biochem Mol Biol 42:557-70. 2012
    ....
  4. ncbi Transcriptome sequencing for SNP discovery across Cucumis melo
    José Blanca
    Institute for the Conservation and Breeding of Agricultural Biodiversity COMAV UPV, Universitat Politècnica de València, Camino de Vera s n, 46022, Valencia, Spain
    BMC Genomics 13:280. 2012
    ....
  5. ncbi Variation revealed by SNP genotyping and morphology provides insight into the origin of the tomato
    José Blanca
    Institute for the Conservation and Improvement of Agricultural Biodiversity, Polytechnic University of Valencia, Camino de Vera, Valencia, Spain
    PLoS ONE 7:e48198. 2012
    ..Subsequently, the Spaniards took plants from Mesoamerica to Spain and from there they were exported to the rest of the world...
  6. ncbi Transcriptomic analysis of tomato carpel development reveals alterations in ethylene and gibberellin synthesis during pat3/pat4 parthenocarpic fruit set
    Laura Pascual
    Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universidad Politecnica de Valencia, Camino de Vera s n, 46022 Valencia, Spain
    BMC Plant Biol 9:67. 2009
    ..We analyzed the transcriptome under normal conditions as well as with forced parthenocarpic development in RP75/59, emasculating the flowers 2 days before anthesis. This analysis helps to understand the fruit set in tomato...
  7. ncbi EcoTILLING in Capsicum species: searching for new virus resistances
    Vicente P Ibiza
    Instituto de Conservacion y Mejora de la Agrodiversidad Valenciana COMAV, Universidad Politecnica de Valencia, 8E CPI, Camino de Vera s n, 46022 Valencia, Spain
    BMC Genomics 11:631. 2010
    ....
  8. ncbi Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)
    José Blanca
    Institute for the Conservation and Breeding of Agricultural Biodiversity, Universidad Politécnica de Valencia COMAV UPV, Camino de Vera s n, 46022 Valencia, Spain
    BMC Genomics 12:104. 2011
    ..However, these tools are still lacking in the Cucurbita genus, thus limiting gene discovery and the process of breeding...
  9. ncbi AFLP and DNA sequence variation in an Andean domesticate, pepino (Solanum muricatum, Solanaceae): implications for evolution and domestication
    Jose M Blanca
    Instituto para la Conservación y Mejora de la Agrodiversidad Valenciana, Universidad Politecnica de Valencia, Camino de Vera 14, 46022 Valencia, Spain
    Am J Bot 94:1219-29. 2007
    ..The high genetic variation of this cultigen indicates that domestication does not always produce a genetic bottleneck...