Research Topics
Genomes and Genes | Joaquin ArinoSummaryCountry: Spain Publications
| Collaborators
|
Detail Information
Publications
Novel protein phosphatases in yeastJoaquin Arino
Department de Bioquimica i Biologia Molecular, Facultat de Veterinaria, Universitat Autonoma de Barcelona, Bellaterra Spain
Eur J Biochem 269:1072-7. 2002..This review will summarize the latest advances in our understanding about how these phosphatases are regulated and fulfil their functions in the yeast cell...
Integrative responses to high pH stress in S. cerevisiaeJoaquin Arino
Departament de Bioquímica i Biologia Molecular and Institut de Biotecnologia i Biomedicina, Universitat Autonoma de Barcelona, Barcelona, Spain
OMICS 14:517-23. 2010..In this review we will examine these responses, their possible interactions, and the role that they play in tolerance to high pH stress...
Alkali metal cation transport and homeostasis in yeastsJoaquin Arino
Departament de Bioquimica i Biologia Molecular, Ed V, Universitat Autonoma de Barcelona, Bellaterra 08193, Barcelona, Spain
Microbiol Mol Biol Rev 74:95-120. 2010....
Type 2C protein phosphatases in fungiJoaquin Arino
Departament de Bioquimica i Biologia Molecular, Institut de Biotecnologia i Biomedicina, Universitat Autonoma de Barcelona, Cerdanyola del Valles 08193, Barcelona, Spain
Eukaryot Cell 10:21-33. 2011..In this work we review the available literature on fungal PP2Cs and explore sequence databases to provide a comprehensive overview of these enzymes in fungi...
Modulation of yeast alkaline cation tolerance by Ypi1 requires calcineurinMaribel Marquina
Institut de Biotecnologia i Biomedicina and Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Bellaterra 08193, Barcelona, Spain
Genetics 190:1355-64. 2012..These results point to a complex role of Ypi1 on the regulation of cation homeostasis, largely mediated by the calcineurin phosphatase...
Functional characterization of the yeast Ppz1 phosphatase inhibitory subunit Hal3: a mutagenesis studyIvan Munoz
Department de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Cerdanyola 08193, Barcelona, Spain
J Biol Chem 279:42619-27. 2004..In contrast, the mutation of His378 did not. This finding suggests that Hal3 may have both Ppz1-dependent and independent functions involving different structural elements...
Ref2, a regulatory subunit of the yeast protein phosphatase 1, is a novel component of cation homoeostasisJofre Ferrer-Dalmau
Departament de Bioquímica i Biologia Molecular and Institut de Biotecnologia i Biomedicina, Universitat Autonoma de Barcelona, Barcelona 08193, Spain
Biochem J 426:355-64. 2010..Remarkably, the evidence collected indicates that the role of Ref2 in cation homoeostasis may be unrelated to its previously identified function in the formation of mRNA via the APT (for associated with Pta1) complex...
Functional characterization of the Saccharomyces cerevisiae VHS3 gene: a regulatory subunit of the Ppz1 protein phosphatase with novel, phosphatase-unrelated functionsAmparo Ruiz
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Bellaterra 08193, Barcelona, Spain
J Biol Chem 279:34421-30. 2004..These results indicate that, besides its role as Ppz1 inhibitory subunit, Vhs3 (and probably Hal3) might have important Ppz-independent functions...
Transcriptional profiling of the protein phosphatase 2C family in yeast provides insights into the unique functional roles of Ptc1Asier González
Departament de Bioquimica i Biologia Molecular, Edificio V, Universitat Autonoma de Barcelona, 08193 Cerdanyola del Valles, Barcelona, Catalonia, Spain
J Biol Chem 281:35057-69. 2006....
Lack of DNA helicase Pif1 disrupts zinc and iron homoeostasis in yeastMaría Guirola
Departament de Genètica and Institut de Biomedicina, Universitat de Barcelona, Barcelona, Spain
Biochem J 432:595-605. 2010..We postulate that lack of Pif1 forces aconitase to play its DNA protective role as a nucleoid protein and that this triggers a domino effect on iron homoeostasis resulting in increased zinc tolerance...
Moonlighting proteins Hal3 and Vhs3 form a heteromeric PPCDC with Ykl088w in yeast CoA biosynthesisAmparo Ruiz
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Spain
Nat Chem Biol 5:920-8. 2009..Our results unveil Hal3 and Vhs3 as moonlighting proteins involved in both CoA biosynthesis and protein phosphatase regulation...
Regulation of Trk-dependent potassium transport by the calcineurin pathway involves the Hal5 kinaseCarlos Casado
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Barcelona, Spain
FEBS Lett 584:2415-20. 2010..This suggests that the control exerted by calcineurin on Hal5 expression may be biologically relevant for Trk1 regulation...
Role of protein phosphatases 2C on tolerance to lithium toxicity in the yeast Saccharomyces cerevisiaeAmparo Ruiz
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Bellaterra 08193, Barcelona, Spain
Mol Microbiol 62:263-77. 2006..These results indicate that Ptc1p modulates the function of Ena1p by regulating the Hal3/Ppz1,2 pathway. In conclusion, overexpression of PTC3 and lack of PTC1 affect lithium tolerance in yeast, although through different mechanisms...
Normal function of the yeast TOR pathway requires the type 2C protein phosphatase Ptc1Asier González
Departament de Bioquimica i Biologia Molecular, Ed V, Universitat Autonoma de Barcelona, Bellaterra 08193, Barcelona, Spain
Mol Cell Biol 29:2876-88. 2009..All of these results provide the first evidence showing that a type 2C protein phosphatase is required for the normal functioning of the TOR pathway...
The role of the Snf1 kinase in the adaptive response of Saccharomyces cerevisiae to alkaline pH stressAntonio Casamayor
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Spain
Biochem J 444:39-49. 2012....
The transcriptional response of the yeast Na(+)-ATPase ENA1 gene to alkaline stress involves three main signaling pathwaysMaria Platara
Department of Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Bellaterra 08193, Barcelona
J Biol Chem 281:36632-42. 2006..Thus, the transcriptional response to alkaline stress of the ENA1 gene integrates three different signaling pathways...
Lack of the Glc7 phosphatase regulatory subunit Ypi1 activates the morphogenetic checkpointMaribel Marquina
Institut de Biotecnologia i Biomedicina and Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Cerdanyola 08193, Spain
Int J Biochem Cell Biol 44:1862-71. 2012..Deletion of SWE1 restored normal Cdc11 levels in the absence of Ypi1. These results demonstrate that Ypi1 plays an important role in the morphogenesis checkpoint, possibly by regulating Swe1...
Development of a predictor for human brain tumors based on gene expression values obtained from two types of microarray technologiesXavier Castells
Grup d Aplicacions Biomèdiques de la RMN GABRMN, Facultat de Biociencies, Universitat Autonoma de Barcelona, Cerdanyola del Valles, Barcelona, Spain
OMICS 14:157-64. 2010..At any rate, this study paves the way for further application of gene signatures to more stringent biopsy discrimination challenges...
Disruption of iron homeostasis in Saccharomyces cerevisiae by high zinc levels: a genome-wide studyM Ayelen Pagani
Departament de Genetica, Universitat de Barcelona, Barcelona, Spain
Mol Microbiol 65:521-37. 2007..These findings suggest that high zinc levels may alter the assembly and/or function of iron-sulphur-containing proteins, as well as the biosynthesis of haem groups, thus establishing a link between zinc, iron and sulphur metabolism...
Use of yeast genetic tools to define biological roles of novel protein phosphatasesJoaquin Arino
Department of Biochemistry and Molecular Biology, Universitat Autonoma de Barcelona, Spain
Methods Mol Biol 365:299-307. 2007..This is particularly useful given the large variety of important biological processes performed by these of enzymes, often necessaries for cell survival, which makes in some cases infeasible the generation of null mutants...
A genomewide screen for tolerance to cationic drugs reveals genes important for potassium homeostasis in Saccharomyces cerevisiaeLina Barreto
Institut de Biotecnologia i Biomedicina, Universitat Autonoma de Barcelona, Cerdanyola del Valles 08193, Barcelona, Spain
Eukaryot Cell 10:1241-50. 2011..A subset of 27 representative mutants were selected and subjected to diverse biochemical tests that, in some cases, allowed us to postulate the basis for the observed phenotypes...
Regulation of ENA1 Na(+)-ATPase gene expression by the Ppz1 protein phosphatase is mediated by the calcineurin pathwayAmparo Ruiz
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Bellaterra 08193, Barcelona, Spain
Eukaryot Cell 2:937-48. 2003..In conclusion, we have identified a novel role for calcineurin, but not alkalinization, in the control of ENA1 expression in ppz1 mutants...
Molecular analysis of a conditional hal3 vhs3 yeast mutant links potassium homeostasis with flocculation and invasivenessAsier González
Departament de Bioquímica i Biologia Molecular and Institut de Biotecnologia i Biomedicina, Universitat Autonoma de Barcelona, Cerdanyola del Valles, 08193 Barcelona, Spain
Fungal Genet Biol 53:1-9. 2013..This model highlights an unsuspected link between potassium homeostasis and these important morphogenetic events...
The Ppz protein phosphatases regulate Trk-independent potassium influx in yeastAmparo Ruiz
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Bellaterra 08193, Barcelona, Spain
FEBS Lett 578:58-62. 2004....
Direct regulation of genes involved in glucose utilization by the calcium/calcineurin pathwayAmparo Ruiz
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Edificio V, Campus de Bellaterra, Cerdanyola, Barcelona 08193, Spain
J Biol Chem 283:13923-33. 2008..We propose that alkalinization of the medium results in impaired glucose utilization and that activation of certain glucose-metabolizing genes by calcineurin contributes to yeast survival under this stress situation...
Use of tetracycline-regulatable promoters for functional analysis of protein phosphatases in yeastJoaquin Arino
Departament de Bioquimica i Biologia Molecular, Universitat Autònoma de Barcelona Bellaterra, Barcelona, 08193, Spain
Methods Enzymol 366:347-58. 2003
The role of the protein kinase A pathway in the response to alkaline pH stress in yeastCarlos Casado
Institut de Biotecnologia i Biomedicina and Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Cerdanyola del Valles, Bellaterra 08193, Barcelona, Spain
Biochem J 438:523-33. 2011..However, the relevance of attenuation of PKA in high pH tolerance is probably not restricted to regulation of Msn2 function...
Mutagenesis analysis of the yeast Nha1 Na+/H+ antiporter carboxy-terminal tail reveals residues required for function in cell cycleErnesto Simon
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Bellaterra 08193, Barcelona, Spain
FEBS Lett 545:239-45. 2003..The later is rather conserved in other related antiporters, while the former is not...
Automated brain tumor biopsy prediction using single-labeling cDNA microarrays-based gene expression profilingXavier Castells
Grup d aplicacions Biomèdiques de la RMN, Departament de Bioquimica i Biologia Molecular, Facultat de Biociencies, Universitat Autonoma de Barcelona, Spain
Diagn Mol Pathol 18:206-18. 2009..Herewith, we demonstrate that primary brain tumor types can be discriminated using microarray data in an automated and objective way...
Use of the TRP1 auxotrophic marker for gene disruption and phenotypic analysis in yeast: a note of warningAsier González
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Barcelona, Spain
FEMS Yeast Res 8:2-5. 2008..Therefore, its use in the past should be revisited and utilization of this marker should be avoided in future analyses...
A role for protein kinase CK2 in plant development: evidence obtained using a dominant-negative mutantJordi Moreno-Romero
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, 08193 Bellaterra, Barcelona, Spain
Plant J 55:118-30. 2008..Our results are consistent with a model in which CK2 plays a key role in cell division and cell expansion, with compelling effects on Arabidopsis development...
The short-term response of yeast to potassium starvationLina Barreto
Institut de Biotecnologia i Biomedicina and Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Bellaterra, 08193, Barcelona, Spain
Environ Microbiol 14:3026-42. 2012....
Identification of multicopy suppressors of cell cycle arrest at the G1-S transition in Saccharomyces cerevisiaeIvan Munoz
Departament de Bioquimica i Biologia Molecular, Universitat Autonoma de Barcelona, Bellaterra 08193, Barcelona
Yeast 20:157-69. 2003..The possible relationship between the known functions of these suppressor genes and the progress through the G(1)-S transition is discussed...
Central nervous system gene expression changes in a transgenic mouse model for bovine spongiform encephalopathyRaul Tortosa
Departament de Medicina i Cirurgia Animals, Universitat Autonoma de Barcelona, 08193, Cerdanyola del Valles, Barcelona, Spain
Vet Res 42:109. 2011..Genes non-previously related to prion diseases should be taken into consideration for further investigations...
Assessing differential expression measurements by highly parallel pyrosequencing and DNA microarrays: a comparative studyJoaquin Arino
Departament de Bioquímica y Biología Molecular and Institut de Biotecnologia i Biomedicina, Universitat Autonoma de Barcelona, Cerdanyola del Valles, Spain
OMICS 17:53-9. 2013..Thus, even in a scenario of low coverage the concordance in the measurements is quite acceptable. On the other hand, the comparatively longer read size obtained by pyrosequencing allows detecting unconventional splicing forms...
The transcriptional response to alkaline pH in Saccharomyces cerevisiae: evidence for calcium-mediated signallingRaquel Serrano
Departament de Bioquimica i Biologia Molecular, Facultat de Veterinaria, Universitat Autonoma de Barcelona, Bellaterra, E 08193, Barcelona, Spain
Mol Microbiol 46:1319-33. 2002..These results demonstrate that the transcriptional response to alkaline pH involves different signalling mechanisms, and that calcium signalling is a relevant component of this response...
