Simon Aa Travers

Summary

Affiliation: South African National Bioinformatics Institute
Country: South Africa

Publications

  1. pmc The influence of N-linked glycans on the molecular dynamics of the HIV-1 gp120 V3 loop
    Natasha T Wood
    South African National Bioinformatics Institute, South African Medical Research Council Bioinformatics Unit, University of the Western Cape, Cape Town, South Africa
    PLoS ONE 8:e80301. 2013
  2. ncbi request reprint QTrim: a novel tool for the quality trimming of sequence reads generated using the Roche/454 sequencing platform
    Ram Krishna Shrestha
    South African National Bioinformatics Institute, SA MRC Bioinformatics Unit, University of the Western Cape, Private Bag X17, Bellville 7535, South Africa
    BMC Bioinformatics 15:33. 2014
  3. pmc Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing
    Vijay Bansode
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland
    BMC Infect Dis 13:52. 2013
  4. pmc Appraising the performance of genotyping tools in the prediction of coreceptor tropism in HIV-1 subtype C viruses
    Saleema Crous
    South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Belville, 7535, South Africa
    BMC Infect Dis 12:203. 2012
  5. pmc Reverse transcriptase drug resistance mutations in HIV-1 subtype C infected patients on ART in Karonga District, Malawi
    Vijay B Bansode
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute, School of Natural Sciences, National University of Ireland, Galway, Ireland
    AIDS Res Ther 8:38. 2011

Collaborators

  • Grace P McCormack
  • Ram Krishna Shrestha
  • Vijay B Bansode
  • Vijay Bansode
  • Natasha T Wood
  • Saleema Crous
  • Amelia C Crampin
  • Bagrey Ngwira
  • Judith R Glynn
  • Neil French
  • Baruch Lubinsky
  • Mónica B J Moinz
  • Ram K Shrestha
  • Elisa Fadda
  • Oliver C Grant
  • Robert J Woods
  • Joanne C Martin
  • Robert Davis

Detail Information

Publications6

  1. pmc The influence of N-linked glycans on the molecular dynamics of the HIV-1 gp120 V3 loop
    Natasha T Wood
    South African National Bioinformatics Institute, South African Medical Research Council Bioinformatics Unit, University of the Western Cape, Cape Town, South Africa
    PLoS ONE 8:e80301. 2013
    ..The conformational effect on the V3 loop provides further support for the suggestion that N-linked glycosylation plays a role in determining HIV-1 coreceptor tropism. ..
  2. ncbi request reprint QTrim: a novel tool for the quality trimming of sequence reads generated using the Roche/454 sequencing platform
    Ram Krishna Shrestha
    South African National Bioinformatics Institute, SA MRC Bioinformatics Unit, University of the Western Cape, Private Bag X17, Bellville 7535, South Africa
    BMC Bioinformatics 15:33. 2014
    ....
  3. pmc Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing
    Vijay Bansode
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland
    BMC Infect Dis 13:52. 2013
    ..The primary focus of this work was to characterize the genetic diversity and evolution of HIV drug resistant variants in an individual's provirus during antiretroviral therapy using next generation sequencing...
  4. pmc Appraising the performance of genotyping tools in the prediction of coreceptor tropism in HIV-1 subtype C viruses
    Saleema Crous
    South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Belville, 7535, South Africa
    BMC Infect Dis 12:203. 2012
    ..While genotyping approaches for coreceptor-tropism prediction in subtype B are well established and verified, they are less so for subtype C...
  5. pmc Reverse transcriptase drug resistance mutations in HIV-1 subtype C infected patients on ART in Karonga District, Malawi
    Vijay B Bansode
    Molecular Evolution and Systematics Laboratory, Zoology, Ryan Institute, School of Natural Sciences, National University of Ireland, Galway, Ireland
    AIDS Res Ther 8:38. 2011
    ..abstract:..