Research Topics
Genomes and Genes
| Vito TurkSummaryAffiliation: Jozef Stefan Institute Country: Slovenia Publications
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Detail Information
Publications
Lysosomal cysteine proteases: facts and opportunitiesV Turk
Department of Biochemistry and Molecular Biology, J Stefan Institute, Ljubljana, Slovenia
EMBO J 20:4629-33. 2001..Some of the features and roles of their structures, specificity, regulation and physiology are discussed...
Lysosomal cathepsins: structure, role in antigen processing and presentation, and cancerVito Turk
Department of Biochemistry and Molecular Biology, J. Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia
Adv Enzyme Regul 42:285-303. 2002
Cystatins: biochemical and structural properties, and medical relevanceVito Turk
J Stefan Institute, Dept of Biochemistry, Molecular and Structural Biology, SI 1000 Ljubljana, Slovenia
Front Biosci 13:5406-20. 2008..The levels of some stefins and cystatins in tissue and body fluids can serve as relatively reliable markers for a variety of diseases. In this review we summarize present knowledge about cystatins and their role in some diseases...
Cysteine cathepsins (proteases)--on the main stage of cancer?Vito Turk
Jozef Stefan Institute, Department of Biochemistry and Molecular Biology, Jamova 39, SI 1000, Ljubljana, Slovenia
Cancer Cell 5:409-10. 2004..Moreover, this study shows that a broad-spectrum cysteine cathepsin inhibitor effectively blocks several stages of tumorigenesis in the RIP1-Tag2 transgenic mouse model, offering new therapeutic opportunities in cancer treatment...
Carboxypeptidases cathepsins X and B display distinct protein profile in human cells and tissuesJanko Kos
Department of Pharmaceutical Biology, Faculty of Pharmacy, University of Ljubljana, Askerceva 7, SI 1000 Ljubljana, Slovenia
Exp Cell Res 306:103-13. 2005..Its expression, restricted to immune cells suggests a role in phagocytosis and the regulation of immune response...
Size and morphology of toxic oligomers of amyloidogenic proteins: a case study of human stefin BSlavko Ceru
Department of Biochemistry, Jozef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
Amyloid 15:147-59. 2008..They also bound, similarly to prefibrillar aggregates, to the plasma membrane and became internalized. Taken together, our results confirm the importance of membrane interaction and perforation in the phenomenon of cytotoxicity...
Cysteine cathepsins trigger caspase-dependent cell death through cleavage of bid and antiapoptotic Bcl-2 homologuesGabriela Droga-Mazovec
Department of Biochemistry, Molecular and Structural Biology, J Stefan Institute, Sl 1000 Ljubljana, Slovenia
J Biol Chem 283:19140-50. 2008..Moreover, XIAP (X-chromosome-linked inhibitor of apoptosis) was also found to be a target of cysteine cathepsins, suggesting that cathepsins can mediate caspase-dependent apoptosis also downstream of mitochondria...
Glycosaminoglycans facilitate procathepsin B activation through disruption of propeptide-mature enzyme interactionsDejan Caglic
Department of Biochemistry, Molecular and Structural Biology, Jozef Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
J Biol Chem 282:33076-85. 2007..Because procathepsin B and GAGs often co-localize in vivo, we propose that GAGs may play a physiological role in the activation of procathepsin B...
Cleavage of MAGI-1, a tight junction PDZ protein, by caspases is an important step for cell-cell detachment in apoptosisUros Gregorc
Department of Biochemistry and Molecular Biology, J Stefan Institute, Ljubljana, Slovenia
Apoptosis 12:343-54. 2007..Thus, MAGI-1 cleavage appears to be an important step in the disassembly of cell-cell contacts during apoptosis...
Dual concentration-dependent activity of thyroglobulin type-1 domain of testican: specific inhibitor and substrate of cathepsin LPrimoz Meh
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia
Biol Chem 386:75-83. 2005..Secondly, the prolonged first loop of the domain occupies a position near the catalytic cysteine residue in a more substrate-like manner, enabling cleavage of the Gly22-Ala23 bond...
Interaction between human cathepsins K, L, and S and elastins: mechanism of elastinolysis and inhibition by macromolecular inhibitorsMarko Novinec
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
J Biol Chem 282:7893-902. 2007..In contrast, thyropins were relatively inefficient in preventing elastinolysis by cysteine cathepsins...
Presence of the propeptide on recombinant lysosomal dipeptidase controls both activation and dimerizationIztok Dolenc
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
Biol Chem 388:47-51. 2007..The propeptide thus controls dimerization, as well as activation, of lysosomal dipeptidase...
Amyloid fibril formation by human stefin B in vitro: immunogold labelling and comparison to stefin AEva Zerovnik
Department of Biochemistry and Molecular Biology, Institute Jozef Stefan, Ljubljana, Slovenia
Biol Chem 383:859-63. 2002..Samples were examined by transmission electron microscopy. Fibrils of stefin B were strongly labelled using polyclonal antibody and Protein A gold, whereas no positive reaction was observed with monoclonal antibody A6/2...
Intracellular aggregation of human stefin B: confocal and electron microscopy studySlavko Ceru
Department of Biochemistry, Molecular and Structural Biology, Jozef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
Biol Cell 102:319-34. 2010..Human StB proved to be a good model system to study amyloid fibril formation in vitro and, as we show here, to study protein aggregation in cells...
Biochemical characterization and structural modeling of human cathepsin E variant 2 in comparison to the wild-type proteinVida Puizdar
Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
Biol Chem 393:177-86. 2012....
Autocatalytic processing of procathepsin B is triggered by proenzyme activityJerica Rozman Pungercar
Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, Ljubljana, Slovenia
FEBS J 276:660-8. 2009....
The mechanism of amyloid-fibril formation by stefin B: temperature and protein concentration dependence of the ratesKatja Skerget
Department of Biochemistry, Molecular and Structural Biology, Jozef Stefan Institute, 1000 Ljubljana, Slovenia
Proteins 74:425-36. 2009....
Intracellular proteolytic activity of cathepsin B is associated with capillary-like tube formation by endothelial cells in vitroAles Premzl
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
J Cell Biochem 97:1230-40. 2006..These results show that, besides multiple regulatory molecules, intracellular cathepsin B also contributes to the neovascularization process and should be considered as a potential therapeutic target...
Interaction with model membranes and pore formation by human stefin B: studying the native and prefibrillar statesSabina Rabzelj
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Ljubljana, Slovenia
FEBS J 275:2455-66. 2008..Similarities to other amyloidogenic proteins and the possible physiological implications of our findings are discussed...
Mouse stefins A1 and A2 (Stfa1 and Stfa2) differentiate between papain-like endo- and exopeptidasesMarko Mihelic
Department of Biochemistry and Molecular Biology, J Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
FEBS Lett 580:4195-9. 2006..In contrast, the inhibitory activities of Stfa2-a and Stfa2-b were found to be roughly equivalent for all targets peptidases...
In vitro study of stability and amyloid-fibril formation of two mutants of human stefin B (cystatin B) occurring in patients with EPM1Sabina Rabzelj
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
Protein Sci 14:2713-22. 2005..The G4R mutant exhibited a much longer lag phase than the wild type, with the accumulation of prefibrillar aggregates. Implications for pathology in view of the higher toxicity of prefibrillar aggregates to cells are discussed...
Human and mouse perforin are processed in part through cleavage by the lysosomal cysteine proteinase cathepsin LSpela Konjar
Department of Biochemistry, Molecular and Structural Biology, Jozef Stefan Institute, Ljubljana, Slovenia
Immunology 131:257-67. 2010..We conclude that granule-bound cathepsins are essential for processing perforin to its active form, and that CatL is an important, but not exclusive, participant in this process...
Recombinant human cathepsin H lacking the mini chain is an endopeptidaseOlga Vasiljeva
Department of Biochemistry and Molecular Biology, Josef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
Biochemistry 42:13522-8. 2003..These results thus indicate that the cathepsin H mini chain is essential for the aminopeptidase activity of the enzyme but has only a minor effect on the inhibition by cystatins...
Differentiation- and maturation-dependent content, localization, and secretion of cystatin C in human dendritic cellsTina Zavasnik-Bergant
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Ljubljana, Slovenia, EU
J Leukoc Biol 78:122-34. 2005..However, these interactions may occur extracellularly in lymph, as suggested by the large excess of CyC over secreted CatS, -L, and -H, and they may facilitate DC migration to lymph nodes...
Sensitization of stefin B-deficient thymocytes towards staurosporin-induced apoptosis is independent of cysteine cathepsinsNatasa Kopitar-Jerala
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
FEBS Lett 579:2149-55. 2005..We conclude that sensitization to apoptosis induced by STS in thymocytes of stefin B-deficient and wild-type mice is not dependent on cathepsin inhibition by stefin B...
Murine and human cathepsin B exhibit similar properties: possible implications for drug discoveryDejan Caglic
Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
Biol Chem 390:175-9. 2009..Thus, both enzymes were expressed and biochemically characterized. The enzymes exhibited similar biochemical properties, indicating that cathepsin B transgenic mouse models could be useful for studying its role in human pathologies...
Interaction between oligomers of stefin B and amyloid-beta in vitro and in cellsKatja Skerget
Department of Biochemistry, Molecular and Structural Biology, Jozef Stefan Institute, Jamova 39, Slovenia
J Biol Chem 285:3201-10. 2010..It also co-immunoprecipitates with the APP fragment containing the Abeta epitope. Thus, stefin B is another APP/Abeta-binding protein in vitro and likely in cells...
Cysteine cathepsins are not critical for TNF-alpha-induced cell death in T98G and U937 cellsMartina Klarić
Department of Biochemistry and Molecular and Structural Biology, J Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
Biochim Biophys Acta 1794:1372-7. 2009....
Lysosomes in apoptosisSaska Ivanova
Department of Biochemistry, Molecular and Structural Biology, J Stefan Institute, Ljubljana, Slovenia
Methods Enzymol 442:183-99. 2008..This chapter reviews the methods used to study lysosomes and lysosomal proteases...
Expression and activity profiling of selected cysteine cathepsins and matrix metalloproteinases in synovial fluids from patients with rheumatoid arthritis and osteoarthritisUrska Pozgan
Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, Ljubljana, Slovenia
Biol Chem 391:571-9. 2010..In addition to proteases, interleukin-6 was detected at significant levels in most samples, suggesting that proinflammatory cytokines might be in-volved in the stimulation of expression of these proteases during inflammation...
Recombinant human procathepsin S is capable of autocatalytic processing at neutral pH in the presence of glycosaminoglycansOlga Vasiljeva
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
FEBS Lett 579:1285-90. 2005..5. This novel property of procathepsin S may have implications in pathological conditions associated with the appearance of active cathepsins outside lysosomes...
Inhibitory p41 isoform of invariant chain and its potential target enzymes cathepsins L and H in distinct populations of macrophages in human lymph nodesValentina Zavasnik-Bergant
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Ljubljana, Slovenia
Immunology 112:378-85. 2004....
Selective disruption of lysosomes in HeLa cells triggers apoptosis mediated by cleavage of Bid by multiple papain-like lysosomal cathepsinsTina Cirman
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
J Biol Chem 279:3578-87. 2004..Incubation of full-length Bid treated with cathepsins B, H, L, and S resulted in rapid cytochrome c release from isolated mitochondria. Thus, Bid may be an important mediator of apoptosis induced by lysosomal disruption...
Recombinant human SMOCs produced by in vitro refolding: calcium-binding properties and interactions with serum proteinsMarko Novinec
Department of Biochemistry, Molecular and Structural Biology, Jozef Stefan Institute, Ljubljana, Slovenia
Protein Expr Purif 62:75-82. 2008..Their identification is among the first pieces of information about the action of the SMOCs on molecular level and opens new possibilities for future research aimed towards elucidating the physiological roles of these versatile proteins...
Inhibitory properties of cystatin F and its localization in U937 promonocyte cellsTomaz Langerholc
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Ljubljana, Slovenia
FEBS J 272:1535-45. 2005..The finding that cystatin F was not colocalized with cystatin C suggests distinct functions for these two cysteine protease inhibitors in U937 cells...
Cellular localization of MAGI-1 caspase cleavage products and their role in apoptosisSaska Ivanova
Department of Biochemistry, Molecular and Structural Biology, J Stefan Institute, SI 1000, Ljubljana, Slovenia
Biol Chem 388:1195-8. 2007..When overexpressed in MDCK cells, both N- and C-terminal MAGI-1 caspase cleavage products exhibited minor proapoptotic activity, although their role in apoptosis is probably more passive...
Cysteine cathepsins are not involved in Fas/CD95 signalling in primary skin fibroblastsLea Bojic
Department of Biochemistry, Molecular and Structural Biology, J Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
FEBS Lett 581:5185-90. 2007..Moreover, Bid cleavage was found to be diminished in cathepsin B-deficient cells. These results suggest that cysteine cathepsins have no active role in Fas/CD95 apoptosis...
Cysteine cathepsins: from structure, function and regulation to new frontiersVito Turk
Department of Biochemistry and Molecular and Structural Biology, J Stefan Institute, Ljubljana, Slovenia
Biochim Biophys Acta 1824:68-88. 2012..In this review, some of the remarkable advances that have taken place in the past decade are presented. This article is part of a Special Issue entitled: Proteolysis 50 years after the discovery of lysosome...
Lysosomes and lysosomal cathepsins in cell deathUrska Repnik
Department of Biochemistry and Molecular and Structural Biology, J Stefan Institute, Jamova, Ljubljana, Slovenia
Biochim Biophys Acta 1824:22-33. 2012..This further suggests that lysosomes and lysosomal cathepsins have a dual role in cell death. This article is part of a Special Issue entitled: Proteolysis 50 years after the discovery of lysosome...
Lysosomal cysteine proteases: structural features and their role in apoptosisVeronika Stoka
Department of Biochemistry and Molecular Biology, J. Stefan Institute, Ljubljana, Slovenia
IUBMB Life 57:347-53. 2005..Special emphasis is given to the newly discovered role of lysosomal cathepsins in apoptotic pathways...
A structural network associated with the kallikrein-kinin and renin-angiotensin systemsVeronika Stoka
Department of Biochemistry and Molecular and Structural Biology, J Stefan Institute, Ljubljana, Slovenia
Biol Chem 391:443-54. 2010..From the latter, all domain interactors up to level 4 were retrieved, thus displaying a more comprehensive representation of the KKS-RAS structural network...
Cathepsin C and plasma glutamate carboxypeptidase secreted from Fischer rat thyroid cells liberate thyroxin from the N-terminus of thyroglobulinDejan Suban
Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
Biochimie 94:719-26. 2012..Additionally, we show that TSH, insulin, and/or somatostatin induce up-regulation of N-acetylglucosaminyltransferase 1, the enzyme responsible for the initiation of biosynthesis of hybrid and complex N-glycosylation of proteins...
Phylogenomic analysis of the cystatin superfamily in eukaryotes and prokaryotesDusan Kordis
Department of Biochemistry and Molecular and Structural Biology, J, Stefan Institute, Ljubljana, Slovenia
BMC Evol Biol 9:266. 2009..Our aim has been to obtain a comprehensive insight into their origin, distribution, diversity, evolution and classification in Eukaryota, Bacteria and Archaea...
Human cathepsin F: expression in baculovirus system, characterization and inhibition by protein inhibitorsMarko Fonovic
Department of Biochemistry and Molecular Biology, J. Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia
Biol Chem 385:505-9. 2004..7 nM). Stefin A inhibited cathepsin F slowly (kass=1.6 x 10(5) M(-1) s(-1)) and with a lower affinity (Ki=25 nM). These data suggest that cathepsin F differs from other related endopeptidases by considerably weaker inhibition by stefins...
Individual recombinant thyroglobulin type-1 domains are substrates for lysosomal cysteine proteinasesGalina Pungercic
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, SI-1 000 Ljubljana, Slovenia
Biol Chem 383:1809-12. 2002..The cleavage points with cathepsins B and L on the second and the fourth domains were determined. The possible reasons for degradation are discussed...
Mechanisms of amyloid fibril formation--focus on domain-swappingEva Zerovnik
Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, Ljubljana, Slovenia
FEBS J 278:2263-82. 2011..We classify these as: (a) templating and nucleation; (b) linear, colloid-like assembly of spherical oligomers; and (c) domain-swapping. In this review, we stress the role of domain-swapping and discuss the role of proline switches...
Metacaspases of Trypanosoma cruzi: possible candidates for programmed cell death mediatorsGregor Kosec
Jozef Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
Mol Biochem Parasitol 145:18-28. 2006..Further experiments will be required to complete the characterization of these proteins and elucidate their role in the parasite...
Lysosomal cysteine cathepsins: signaling pathways in apoptosisVeronika Stoka
Department of Biochemistry and Molecular Biology, J Stefan Institute, SI 1000 Ljubljana, Slovenia
Biol Chem 388:555-60. 2007..Once in the cytosol, cathepsins can trigger cell death by different mechanisms. Here we discuss the different signaling pathways used by lysosomal proteases to trigger apoptosis and their potential role in physiological processes...
Intracellular and extracellular cathepsin B facilitate invasion of MCF-10A neoT cells through reconstituted extracellular matrix in vitroAles Premzl
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
Exp Cell Res 283:206-14. 2003..Our results show that intracellular and extracellular cathepsin B activity contribute to in vitro invasion of MCF-10A neoT cells and suggest that inhibitors capable of impairing both fractions have a potential as new anticancer drugs...
The proinflammatory cytokines interleukin-1α and tumor necrosis factor α promote the expression and secretion of proteolytically active cathepsin S from human chondrocytesDejan Caglic
Department of Biochemistry, Molecular and Structural Biology, Jozef Stefan Institute, Jamova 39, SI 1000 Ljubljana, Slovenia
Biol Chem 394:307-16. 2013....
Ferri-liposomes as an MRI-visible drug-delivery system for targeting tumours and their microenvironmentGeorgy Mikhaylov
Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, SI 1000 Ljubljana, Slovenia
Nat Nanotechnol 6:594-602. 2011....
Structural characterization of thyroglobulin type-1 domains of equistatinKatja Galesa
Department of Biochemistry and Molecular Biology, J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia
FEBS Lett 539:120-4. 2003..In addition, we show that the interaction of eq d-2 with cathepsin D results in conformational changes, which is not the case for the eq d-1/papain interaction...
Protease signalling: the cutting edgeBoris Turk
Department of Biochemistry and Molecular and Structural Biology, Jozef Stefan Institute, Ljubljana, Slovenia
EMBO J 31:1630-43. 2012..Similarly, links with other signalling systems are not well established. Herein, we will highlight current challenges in protease research...
Human brain cathepsin H as a neuropeptide and bradykinin metabolizing enzymePika Mesko Brguljan
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, Ljubljana 1000, Slovenia
Peptides 24:1977-84. 2003....
Protein aggregation as a possible cause for pathology in a subset of familial Unverricht-Lundborg diseaseSlavko Ceru
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, SI-1000 Ljubljana, Slovenia
Med Hypotheses 64:955-9. 2005....
Diversity and evolution of the thyroglobulin type-1 domain superfamilyMarko Novinec
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Jamova 39, Ljubljana, Slovenia
Mol Biol Evol 23:744-55. 2006....
Do lysosomes induce cell death?Veronika Stoka
J Stefan Institute, Ljubljana, Slovenia
IUBMB Life 58:493-4. 2006
hDLG/SAP97, a member of the MAGUK protein family, is a novel caspase target during cell-cell detachment in apoptosisUros Gregorc
Department of Biochemistry and Molecular Biology, J. Stefan Institute, SI-1000 Ljubljana, Slovenia
Biol Chem 386:705-10. 2005....
Apoptotic pathways: involvement of lysosomal proteasesBoris Turk
Department of Biochemistry and Molecular Biology, Jozef Stefan Institute, Ljubljana, Slovenia
Biol Chem 383:1035-44. 2002..However, there is increasing evidence that lysosomal proteases are also involved in apoptosis. In this review various lysosomal proteases and their potential contribution to propagation of apoptosis are discussed...
Human stefin B readily forms amyloid fibrils in vitroEva Zerovnik
Department of Biochemistry and Molecular Biology, Institute Jozef Stefan, Jamova 39, 1000 Ljubljana, Slovenia
Biochim Biophys Acta 1594:1-5. 2002..The finding that human stefin B, in contrast to the homologue stefin A, forms amyloid fibrils rather easily should promote further studies of the protein's behaviour in vivo, and/or as a model system for fibrillogenesis...
