Tobias Sjoblom

Summary

Publications

  1. pmc Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing
    Xiang Jiao
    Department of Immunology, Genetics, and Pathology, Uppsala University, Uppsala, SE 751 85, Sweden
    BMC Genomics 14:165. 2013
  2. pmc Sequence based analysis of U-2973, a cell line established from a double-hit B-cell lymphoma with concurrent MYC and BCL2 rearrangements
    Sean D Hooper
    Department of Immunology, Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Uppsala, 751 85, Sweden
    BMC Res Notes 5:648. 2012
  3. pmc Structural alterations from multiple displacement amplification of a human genome revealed by mate-pair sequencing
    Xiang Jiao
    Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden
    PLoS ONE 6:e22250. 2011
  4. pmc Somatic mutations in the Notch, NF-KB, PIK3CA, and Hedgehog pathways in human breast cancers
    Xiang Jiao
    Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden
    Genes Chromosomes Cancer 51:480-9. 2012
  5. pmc Automated genotyping of biobank samples by multiplex amplification of insertion/deletion polymorphisms
    Lucy Mathot
    Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden
    PLoS ONE 7:e52750. 2012
  6. pmc Automated serial extraction of DNA and RNA from biobanked tissue specimens
    Lucy Mathot
    Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, SE 751 85, Uppsala, Sweden
    BMC Biotechnol 13:66. 2013

Collaborators

  • Mats Nilsson
  • Xiang Jiao
  • Lucy Mathot
  • Sean D Hooper
  • Christian Tellgren-Roth
  • Johan Botling
  • Fredrik Warnberg
  • Monica Wallin
  • Chatarina Larsson
  • Tatjana Djureinovic
  • Rachel Karchin
  • Lucia Cavelier
  • Laura D Wood
  • Phillip Buckhaults
  • Saraswati Sukumar
  • Kornelia Polyak
  • Marie Allen
  • Hannah Carter
  • Sian Jones
  • Dewey Kim
  • Farah L Rehman
  • Lotte Moens
  • Monica Lindman
  • Elin Falk-Sörqvist
  • Elisabeth Sundström
  • Jonathan Mangion
  • Yutao Fu
  • Magnus Rosenlund
  • Liqun He

Detail Information

Publications6

  1. pmc Gene rearrangements in hormone receptor negative breast cancers revealed by mate pair sequencing
    Xiang Jiao
    Department of Immunology, Genetics, and Pathology, Uppsala University, Uppsala, SE 751 85, Sweden
    BMC Genomics 14:165. 2013
    ..To identify novel somatic chromosomal rearrangements, we determined the genome structures of 15 hormone-receptor negative breast tumors by long-insert mate pair massively parallel sequencing...
  2. pmc Sequence based analysis of U-2973, a cell line established from a double-hit B-cell lymphoma with concurrent MYC and BCL2 rearrangements
    Sean D Hooper
    Department of Immunology, Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Uppsala, 751 85, Sweden
    BMC Res Notes 5:648. 2012
    ..Recently, a cell line was established from a patient with this complex lymphoma and analyzed using conventional tools revealing it contains both MYC and BCL2 translocation events...
  3. pmc Structural alterations from multiple displacement amplification of a human genome revealed by mate-pair sequencing
    Xiang Jiao
    Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden
    PLoS ONE 6:e22250. 2011
    ..While multiple strand displacement amplification may find uses in translocation analyses, it is likely that alternative amplification strategies need to be developed to meet the demands of cancer genomics...
  4. pmc Somatic mutations in the Notch, NF-KB, PIK3CA, and Hedgehog pathways in human breast cancers
    Xiang Jiao
    Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden
    Genes Chromosomes Cancer 51:480-9. 2012
    ..These findings strengthen the evidence for involvement of the Notch, Hedgehog, NF-KB, and PIK3CA pathways in breast cancer development, and point to novel processes that likely are involved...
  5. pmc Automated genotyping of biobank samples by multiplex amplification of insertion/deletion polymorphisms
    Lucy Mathot
    Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden
    PLoS ONE 7:e52750. 2012
    ..24 tumor-normal patient samples were successfully matched using this method. The potential use of the developed assay for forensic applications is discussed...
  6. pmc Automated serial extraction of DNA and RNA from biobanked tissue specimens
    Lucy Mathot
    Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, SE 751 85, Uppsala, Sweden
    BMC Biotechnol 13:66. 2013
    ..A purpose developed magnetic bead based technology to serially extract both DNA and RNA from tissues was automated on a Tecan Freedom Evo robotic workstation...