Kang Ning

Summary

Affiliation: National University of Singapore
Country: Singapore

Publications

  1. ncbi request reprint Algorithm for peptide sequencing by tandem mass spectrometry based on better preprocessing and anti-symmetric computational model
    Kang Ning
    Department of Computer Science, National University of Singapore, Block S15, 3 Science Drive 2, Singapore 117543, Singapore
    Comput Syst Bioinformatics Conf 6:19-30. 2007
  2. pmc Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm
    Kang Ning
    Department of Computer Science, National University of Singapore, Science Drive, Singapore 117543, Singapore
    BMC Bioinformatics 7:S12. 2006
  3. ncbi request reprint On preprocessing and antisymmetry in de novo peptide sequencing: improving efficiency and accuracy
    Kang Ning
    Department of Computer Science, National University of Singapore, Block S15, 3 Science Drive 2, Singapore 117543, Singapore
    J Bioinform Comput Biol 6:467-92. 2008
  4. ncbi request reprint The distribution and deposition algorithm for multiple oligo nucleotide arrays
    Kang Ning
    Department of Computer Science, National University of Singapore, 3 Science Drive 2 117543, Singapore
    Genome Inform 17:89-99. 2006
  5. ncbi request reprint PepSOM: an algorithm for peptide identification by tandem mass spectrometry based on SOM
    Kang Ning
    Department of Computer Science, School of Computing, National University of Singapore, 3 Science Drive 2, 117543, Singapore
    Genome Inform 17:194-205. 2006
  6. ncbi request reprint An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry
    Kang Ning
    Department of Computer Science, School of Computing, National University of Singapore, Computing 1, Singapore 117590
    Genome Inform 19:119-30. 2007
  7. ncbi request reprint Using indirect protein-protein interactions for protein complex prediction
    Hon Nian Chua
    Graduate School of Integrated Sciences, National University of Singapore, Singapore
    J Bioinform Comput Biol 6:435-66. 2008
  8. pmc MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure
    Sriganesh Srihari
    Department of Computer Science, National University of Singapore, Singapore
    BMC Bioinformatics 11:504. 2010
  9. ncbi request reprint Modeling and characterization of multi-charge mass spectra for peptide sequencing
    Ket Fah Chong
    Department of Computer Science, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore
    J Bioinform Comput Biol 4:1329-52. 2006
  10. ncbi request reprint Using indirect protein-protein interactions for protein complex predication
    Hon Nian Chua
    Graduate School of Integrated Sciences, National University of Singapore, Singapore
    Comput Syst Bioinformatics Conf 6:97-109. 2007

Detail Information

Publications13

  1. ncbi request reprint Algorithm for peptide sequencing by tandem mass spectrometry based on better preprocessing and anti-symmetric computational model
    Kang Ning
    Department of Computer Science, National University of Singapore, Block S15, 3 Science Drive 2, Singapore 117543, Singapore
    Comput Syst Bioinformatics Conf 6:19-30. 2007
    ..We have also proposed a novel algorithm which incorporate preprocessing and new model for anti-symmetric issue, and experiments show that this algorithm has better performance on datasets examined...
  2. pmc Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm
    Kang Ning
    Department of Computer Science, National University of Singapore, Science Drive, Singapore 117543, Singapore
    BMC Bioinformatics 7:S12. 2006
    ..Unfortunately, most do not work well on large SCS instances where there are many, long sequences...
  3. ncbi request reprint On preprocessing and antisymmetry in de novo peptide sequencing: improving efficiency and accuracy
    Kang Ning
    Department of Computer Science, National University of Singapore, Block S15, 3 Science Drive 2, Singapore 117543, Singapore
    J Bioinform Comput Biol 6:467-92. 2008
    ..We integrate our findings on preprocessing and the antisymmetry problem with some current models for peptide sequencing. Experimental results show that our findings help to improve accuracies for de novo sequencing...
  4. ncbi request reprint The distribution and deposition algorithm for multiple oligo nucleotide arrays
    Kang Ning
    Department of Computer Science, National University of Singapore, 3 Science Drive 2 117543, Singapore
    Genome Inform 17:89-99. 2006
    ..Two other algorithms were also proposed and used for comparison. Experiments show that our algorithm can effectively output short synthesis sequences for multiple arrays, and the algorithm is efficient...
  5. ncbi request reprint PepSOM: an algorithm for peptide identification by tandem mass spectrometry based on SOM
    Kang Ning
    Department of Computer Science, School of Computing, National University of Singapore, 3 Science Drive 2, 117543, Singapore
    Genome Inform 17:194-205. 2006
    ..Experiments show that our algorithm is both fast and accurate in peptide identification...
  6. ncbi request reprint An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry
    Kang Ning
    Department of Computer Science, School of Computing, National University of Singapore, Computing 1, Singapore 117590
    Genome Inform 19:119-30. 2007
    ..Experiments showed that our algorithm is both fast and accurate for peptide identification. Experiments on spectra with simulated and real PTMs confirmed that our algorithm is accurate for identifying PTMs...
  7. ncbi request reprint Using indirect protein-protein interactions for protein complex prediction
    Hon Nian Chua
    Graduate School of Integrated Sciences, National University of Singapore, Singapore
    J Bioinform Comput Biol 6:435-66. 2008
    ..Since no other information except the original PPI network is used, our approach would be very useful for protein complex prediction, especially for prediction of novel protein complexes...
  8. pmc MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure
    Sriganesh Srihari
    Department of Computer Science, National University of Singapore, Singapore
    BMC Bioinformatics 11:504. 2010
    ..However, MCL produces many noisy clusters, which either do not match known complexes or have additional proteins that reduce the accuracies of correctly predicted complexes...
  9. ncbi request reprint Modeling and characterization of multi-charge mass spectra for peptide sequencing
    Ket Fah Chong
    Department of Computer Science, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore
    J Bioinform Comput Biol 4:1329-52. 2006
    ..Evaluation on multi-charge spectra shows that our simple GBST algorithm outperforms Lutefisk and PepNovo, especially for the GPM spectra of charge three or more...
  10. ncbi request reprint Using indirect protein-protein interactions for protein complex predication
    Hon Nian Chua
    Graduate School of Integrated Sciences, National University of Singapore, Singapore
    Comput Syst Bioinformatics Conf 6:97-109. 2007
    ..Since no any other information except the original PPI network is used, our approach would be very useful for protein complex prediction, especially for prediction of novel protein complexes...
  11. ncbi request reprint Refining Markov Clustering for protein complex prediction by incorporating core-attachment structure
    Sriganesh Srihari
    School of Computing, National University of Singapore, Singapore 117590, Singapore
    Genome Inform 23:159-68. 2009
    ..We also discuss several instances to show that our predicted complexes clearly adhere to the core-attachment structure as revealed by Gavin et al...
  12. pmc A post-processing method for optimizing synthesis strategy for oligonucleotide microarrays
    Kang Ning
    Department of Computer Science, National University of Singapore Singapore 117543
    Nucleic Acids Res 33:e144. 2005
    ....
  13. ncbi request reprint The antibody preparation and expression of human Pescadillo
    Hao Zhang
    Beijing Institute of Biotechnology, Beijing, 100850, China
    Sci China C Life Sci 50:298-304. 2007
    ..Taken together, these data suggest that Pescadillo may play important roles in the initiation and development of cancer and may be a potential target in cancer diagnosis and therapy...