Janet C Siebert

Summary

Publications

  1. pmc Exhaustive expansion: A novel technique for analyzing complex data generated by higher-order polychromatic flow cytometry experiments
    Janet C Siebert
    CytoAnalytics, Denver, CO, USA
    J Transl Med 8:106. 2010
  2. doi request reprint Integrating and mining diverse data in human immunological studies
    Janet C Siebert
    CytoAnalytics, Denver, CO, USA
    Bioanalysis 6:209-23. 2014
  3. pmc The Stanford Data Miner: a novel approach for integrating and exploring heterogeneous immunological data
    Janet C Siebert
    CytoAnalytics, Denver, CO, USA
    J Transl Med 10:62. 2012
  4. pmc Expression profiling in canine osteosarcoma: identification of biomarkers and pathways associated with outcome
    Liza E O'Donoghue
    Department of Clinical Sciences, Colorado State University, Fort Collins, Colorado, USA
    BMC Cancer 10:506. 2010
  5. doi request reprint An analytical workflow for investigating cytokine profiles
    Janet C Siebert
    CytoAnalytics, Analytical Services, Denver, Colorado 80209, USA
    Cytometry A 73:289-98. 2008
  6. doi request reprint Monitoring cytokine profiles during immunotherapy
    Janet C Siebert
    Robert W Franz Cancer Research Center, Earle A Chiles Research Institute, Providence Cancer Center, Portland, OR 97213, USA
    Immunotherapy 2:799-816. 2010
  7. pmc Dominant suppression of Addison's disease associated with HLA-B15
    Peter R Baker
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Aurora, Colorado 80045 6511, USA
    J Clin Endocrinol Metab 96:2154-62. 2011
  8. pmc Replication and further characterization of a Type 1 diabetes-associated locus at the telomeric end of the major histocompatibility complex
    Erin E Baschal
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, 1775 Aurora Ct, Aurora, CO 80045, USA
    J Diabetes 3:238-47. 2011
  9. pmc Congruence as a measurement of extended haplotype structure across the genome
    Erin E Baschal
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Denver, CO 80045, USA
    J Transl Med 10:32. 2012
  10. pmc Haplotype analysis discriminates genetic risk for DR3-associated endocrine autoimmunity and helps define extreme risk for Addison's disease
    Peter R Baker
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Aurora, Colorado 80045 6511, USA
    J Clin Endocrinol Metab 95:E263-70. 2010

Collaborators

Detail Information

Publications10

  1. pmc Exhaustive expansion: A novel technique for analyzing complex data generated by higher-order polychromatic flow cytometry experiments
    Janet C Siebert
    CytoAnalytics, Denver, CO, USA
    J Transl Med 8:106. 2010
    ....
  2. doi request reprint Integrating and mining diverse data in human immunological studies
    Janet C Siebert
    CytoAnalytics, Denver, CO, USA
    Bioanalysis 6:209-23. 2014
    ..Our goal is to provide bioanalysts, immunologists and data analysts with a valuable perspective with which to approach the multiassay high-dimensional datasets generated by contemporary immunological studies. ..
  3. pmc The Stanford Data Miner: a novel approach for integrating and exploring heterogeneous immunological data
    Janet C Siebert
    CytoAnalytics, Denver, CO, USA
    J Transl Med 10:62. 2012
    ..g., mean cytokine levels by age and gender)...
  4. pmc Expression profiling in canine osteosarcoma: identification of biomarkers and pathways associated with outcome
    Liza E O'Donoghue
    Department of Clinical Sciences, Colorado State University, Fort Collins, Colorado, USA
    BMC Cancer 10:506. 2010
    ..Unfortunately, OSA is an aggressive cancer with a high metastatic rate. Characterization of OSA with regard to its metastatic potential and chemotherapeutic resistance will improve both prognostic capabilities and treatment modalities...
  5. doi request reprint An analytical workflow for investigating cytokine profiles
    Janet C Siebert
    CytoAnalytics, Analytical Services, Denver, Colorado 80209, USA
    Cytometry A 73:289-98. 2008
    ..In conclusion, the analytical workflow described herein yielded statistically supported and biologically relevant findings that were otherwise unapparent...
  6. doi request reprint Monitoring cytokine profiles during immunotherapy
    Janet C Siebert
    Robert W Franz Cancer Research Center, Earle A Chiles Research Institute, Providence Cancer Center, Portland, OR 97213, USA
    Immunotherapy 2:799-816. 2010
    ..We present strategies for analyzing data, emphasizing both multidimensional analysis and the value of treating each donor as his or her own control...
  7. pmc Dominant suppression of Addison's disease associated with HLA-B15
    Peter R Baker
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Aurora, Colorado 80045 6511, USA
    J Clin Endocrinol Metab 96:2154-62. 2011
    ..Highest genetic risk is associated with the Major Histocompatibility region (MHC), specifically human leukocyte antigen (HLA)-DR3 haplotypes (containing HLA-B8) and HLA-DR4...
  8. pmc Replication and further characterization of a Type 1 diabetes-associated locus at the telomeric end of the major histocompatibility complex
    Erin E Baschal
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, 1775 Aurora Ct, Aurora, CO 80045, USA
    J Diabetes 3:238-47. 2011
    ..As further families have been analyzed in the Type 1 Diabetes Genetics Consortium (T1DGC), we tested replication of the association and, with more data, analyzed haplotypic associations...
  9. pmc Congruence as a measurement of extended haplotype structure across the genome
    Erin E Baschal
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Denver, CO 80045, USA
    J Transl Med 10:32. 2012
    ..Confronted with high-density SNP data across the major histocompatibility complex (MHC) for 2,300 complete families, compiled by the Type 1 Diabetes Genetics Consortium (T1DGC), we developed software for studying extended haplotypes...
  10. pmc Haplotype analysis discriminates genetic risk for DR3-associated endocrine autoimmunity and helps define extreme risk for Addison's disease
    Peter R Baker
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Aurora, Colorado 80045 6511, USA
    J Clin Endocrinol Metab 95:E263-70. 2010
    ..Multiple autoimmune disorders (e.g. Addison's disease, type 1 diabetes, celiac disease) are associated with HLA-DR3, but it is likely that alleles of additional genes in linkage disequilibrium with HLA-DRB1 contribute to disease...