Jasmin Saric

Summary

Publications

  1. ncbi Large-scale extraction of gene regulation for model organisms in an ontological context
    Jasmin Saric
    European Media Laboratory GmbH, D 69118 Heidelberg, Germany
    In Silico Biol 5:21-32. 2005
  2. ncbi Extraction of regulatory gene/protein networks from Medline
    Jasmin Saric
    EML Research gGmbH D 69118 Heidelberg, Germany
    Bioinformatics 22:645-50. 2006
  3. ncbi Notes on the use of ontologies in the biochemical domain
    Isabel Rojas
    Scientific Databases and Visualisation Group, EML Research, Heidelberg, Germany
    In Silico Biol 4:89-96. 2004
  4. ncbi A database system for the analysis of biochemical pathways
    Isabel Rojas
    European Media Laboratory, Heidelberg, Germany
    In Silico Biol 2:75-86. 2002
  5. ncbi Literature mining for the biologist: from information retrieval to biological discovery
    Lars Juhl Jensen
    European Molecular Biology Laboratory, D 69117 Heidelberg, Germany
    Nat Rev Genet 7:119-29. 2006

Detail Information

Publications5

  1. ncbi Large-scale extraction of gene regulation for model organisms in an ontological context
    Jasmin Saric
    European Media Laboratory GmbH, D 69118 Heidelberg, Germany
    In Silico Biol 5:21-32. 2005
    ..The main reason for the comparable precision rates is the ontological model that was built beforehand and served as a guiding force for the manual coding of the syntactosemantic rules...
  2. ncbi Extraction of regulatory gene/protein networks from Medline
    Jasmin Saric
    EML Research gGmbH D 69118 Heidelberg, Germany
    Bioinformatics 22:645-50. 2006
    ..The biomedical literature, however, contains information on several other equally important regulatory mechanisms, in particular phosphorylation, which we now expanded for our rule-based system also to extract...
  3. ncbi Notes on the use of ontologies in the biochemical domain
    Isabel Rojas
    Scientific Databases and Visualisation Group, EML Research, Heidelberg, Germany
    In Silico Biol 4:89-96. 2004
    ..The paper does not intend to be a thorough review of the existing work in the area. It highlights the uses that are given to ontologies in the Scientific Databases and Visualisation Group at EML Research, in Heidelberg...
  4. ncbi A database system for the analysis of biochemical pathways
    Isabel Rojas
    European Media Laboratory, Heidelberg, Germany
    In Silico Biol 2:75-86. 2002
    ..In this paper we describe the general structure of our system, concentrating on the ontology-based database as the key component of the system...
  5. ncbi Literature mining for the biologist: from information retrieval to biological discovery
    Lars Juhl Jensen
    European Molecular Biology Laboratory, D 69117 Heidelberg, Germany
    Nat Rev Genet 7:119-29. 2006
    ..However, the latter will require the integration of literature and high-throughput data, which should encourage close collaborations between biologists and computational linguists...