João Carneiro

Summary

Affiliation: Institute of Molecular Pathology and Immunology
Country: Portugal

Publications

  1. doi request reprint SPInDel: a multifunctional workbench for species identification using insertion/deletion variants
    João Carneiro
    Institute of Molecular Pathology and Immunology, University of Porto IPATIMUP, Porto, Portugal
    Mol Ecol Resour 12:1190-5. 2012
  2. pmc MitoBreak: the mitochondrial DNA breakpoints database
    Joana Damas
    Institute of Molecular Pathology and Immunology of the University of Porto IPATIMUP, Rua Dr Roberto Frias s n, Porto 4200 465, Portugal, Faculty of Sciences, University of Porto, Rua do Campo Alegre, S N, Porto 4169 007, Portugal and Interdisciplinary Centre of Marine and Environmental Research CIIMAR CIMAR, University of Porto, Rua dos Bragas 289, Porto 4050 123, Portugal
    Nucleic Acids Res 42:D1261-8. 2014
  3. pmc Gains, losses and changes of function after gene duplication: study of the metallothionein family
    Ana Moleirinho
    IPATIMUP Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal
    PLoS ONE 6:e18487. 2011
  4. pmc The evolutionary portrait of metazoan NAD salvage
    João Carneiro
    IPATIMUP Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal
    PLoS ONE 8:e64674. 2013
  5. doi request reprint Mitochondrial DNA rearrangements in health and disease--a comprehensive study
    Joana Damas
    Institute of Molecular Pathology and Immunology of the University of Porto IPATIMUP, Rua Dr Roberto Frias s n, Porto, Portugal
    Hum Mutat 35:1-14. 2014
  6. pmc Mitochondrial DNA deletions are associated with non-B DNA conformations
    Joana Damas
    Institute of Molecular Pathology and Immunology, University of Porto IPATIMUP, Rua Dr Roberto Frias s n, 4200 465 Porto, Portugal
    Nucleic Acids Res 40:7606-21. 2012
  7. pmc The role of recombination in the origin and evolution of alu subfamilies
    Ana Teixeira-Silva
    IPATIMUP Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal
    PLoS ONE 8:e64884. 2013
  8. doi request reprint Identification of mtDNA lineages of Sus scrofa by multiplex single base extension for the authentication of processed food products
    Barbara van Asch
    Instituto de Patologia e Imunologia da Universidade do Porto, Rua Dr Roberto Frias s n, Porto, Portugal
    J Agric Food Chem 59:6920-6. 2011
  9. doi request reprint Evidence for variable selective pressures at a large secondary structure of the human mitochondrial DNA control region
    Filipe Pereira
    Instituto de Patologia e Imunologia Molecular da Universidade do Porto, Porto, Portugal
    Mol Biol Evol 25:2759-70. 2008
  10. pmc Epistatic interactions modulate the evolution of mammalian mitochondrial respiratory complex components
    Luisa Azevedo
    IPATIMUP Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal
    BMC Genomics 10:266. 2009

Detail Information

Publications10

  1. doi request reprint SPInDel: a multifunctional workbench for species identification using insertion/deletion variants
    João Carneiro
    Institute of Molecular Pathology and Immunology, University of Porto IPATIMUP, Porto, Portugal
    Mol Ecol Resour 12:1190-5. 2012
    ..g. in rRNA genes) without the required step of DNA sequencing. The executable files, source code, documentation and test data sets are freely available at http://www.portugene.com/SPInDel/SPInDel_webworkbench.html...
  2. pmc MitoBreak: the mitochondrial DNA breakpoints database
    Joana Damas
    Institute of Molecular Pathology and Immunology of the University of Porto IPATIMUP, Rua Dr Roberto Frias s n, Porto 4200 465, Portugal, Faculty of Sciences, University of Porto, Rua do Campo Alegre, S N, Porto 4169 007, Portugal and Interdisciplinary Centre of Marine and Environmental Research CIIMAR CIMAR, University of Porto, Rua dos Bragas 289, Porto 4050 123, Portugal
    Nucleic Acids Res 42:D1261-8. 2014
    ....
  3. pmc Gains, losses and changes of function after gene duplication: study of the metallothionein family
    Ana Moleirinho
    IPATIMUP Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal
    PLoS ONE 6:e18487. 2011
    ..Altogether our findings provide novel data on the evolution and diversification of MT gene duplicates, a valuable resource for understanding the vast set of biological processes in which these proteins are involved...
  4. pmc The evolutionary portrait of metazoan NAD salvage
    João Carneiro
    IPATIMUP Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal
    PLoS ONE 8:e64674. 2013
    ..The results anticipate that NAMPTs and PNCs are simultaneously active, raising the possibility that NAD salvage pathways are not redundant as both are maintained to fulfill the requirement for NAD production in some species...
  5. doi request reprint Mitochondrial DNA rearrangements in health and disease--a comprehensive study
    Joana Damas
    Institute of Molecular Pathology and Immunology of the University of Porto IPATIMUP, Rua Dr Roberto Frias s n, Porto, Portugal
    Hum Mutat 35:1-14. 2014
    ..portugene.com/mtDNArearrangements.html)...
  6. pmc Mitochondrial DNA deletions are associated with non-B DNA conformations
    Joana Damas
    Institute of Molecular Pathology and Immunology, University of Porto IPATIMUP, Rua Dr Roberto Frias s n, 4200 465 Porto, Portugal
    Nucleic Acids Res 40:7606-21. 2012
    ..Overall, the data presented in this study suggest that non-B DNA conformations are a key element of the mtDNA deletion process...
  7. pmc The role of recombination in the origin and evolution of alu subfamilies
    Ana Teixeira-Silva
    IPATIMUP Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal
    PLoS ONE 8:e64884. 2013
    ..These results demonstrate that at least two subfamilies are likely to have emerged from ectopic Alu-Alu recombination, which stimulates further research regarding the potential of chimeric active Alus to punctuate the genome...
  8. doi request reprint Identification of mtDNA lineages of Sus scrofa by multiplex single base extension for the authentication of processed food products
    Barbara van Asch
    Instituto de Patologia e Imunologia da Universidade do Porto, Rua Dr Roberto Frias s n, Porto, Portugal
    J Agric Food Chem 59:6920-6. 2011
    ..Taking into consideration the limitations presented by other methodologies, this mtDNA-based test probably attains the highest resolution for the direct genetic test for population of origin in Sus scrofa food products...
  9. doi request reprint Evidence for variable selective pressures at a large secondary structure of the human mitochondrial DNA control region
    Filipe Pereira
    Instituto de Patologia e Imunologia Molecular da Universidade do Porto, Porto, Portugal
    Mol Biol Evol 25:2759-70. 2008
    ....
  10. pmc Epistatic interactions modulate the evolution of mammalian mitochondrial respiratory complex components
    Luisa Azevedo
    IPATIMUP Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal
    BMC Genomics 10:266. 2009
    ..In this current study, we focused on the molecular mechanism underlying the epistatic compensatory process in mammalian mitochondrial OXPHOS proteins using a combination of in-depth structural and sequence analyses...