- Path2Models: large-scale generation of computational models from biochemical pathway mapsFinja BÃ¼chel
European Molecular Biology Laboratory, European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
BMC Syst Biol 7:116. 2013..However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data...
- Majority rules with random tie-breaking in Boolean gene regulatory networksClaudine Chaouiya
Instituto Gulbenkian de CiÃªncia, Oeiras, Portugal
PLoS ONE 8:e69626. 2013....
- SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and toolsClaudine Chaouiya
Instituto Gulbenkian de Ciencia, Rua da Quinta Grande 6, 2780 156 Oeiras, Portugal
BMC Syst Biol 7:135. 2013..While numerous groups have developed specific computational tools that provide original methods to analyse qualitative models, a standard format to exchange qualitative models has been missing...