Claudine Chaouiya

Summary

Country: Portugal

Publications

  1. pmc Path2Models: large-scale generation of computational models from biochemical pathway maps
    Finja Büchel
    European Molecular Biology Laboratory, European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    BMC Syst Biol 7:116. 2013
  2. pmc Majority rules with random tie-breaking in Boolean gene regulatory networks
    Claudine Chaouiya
    Instituto Gulbenkian de Ciência, Oeiras, Portugal
    PLoS ONE 8:e69626. 2013
  3. pmc SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
    Claudine Chaouiya
    Instituto Gulbenkian de Ciencia, Rua da Quinta Grande 6, 2780 156 Oeiras, Portugal
    BMC Syst Biol 7:135. 2013

Collaborators

  • Julio Saez-Rodriguez
  • Nicolas Le Novère
  • Finja Büchel
  • Andreas Dräger
  • Martin Golebiewski
  • Michael Schubert
  • Neil Swainston
  • Michael Hucka
  • Douglas B Kell
  • Wolfgang Müller
  • Florian Mittag
  • Tobias Czauderna
  • Nicolas Rodriguez
  • Clemens Wrzodek
  • Michael Wybrow
  • Henning Hermjakob
  • Matthias Rall
  • Camille Laibe
  • Andreas Zell
  • Martijn van Iersel
  • Pedro Mendes
  • Falk Schreiber
  • Roland Keller
  • Nicolas Le Novère
  • Mihai Glont
  • Sarah Keating

Detail Information

Publications3

  1. pmc Path2Models: large-scale generation of computational models from biochemical pathway maps
    Finja Büchel
    European Molecular Biology Laboratory, European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    BMC Syst Biol 7:116. 2013
    ..However, the majority of these models are still created de novo, based on literature mining and the manual processing of pathway data...
  2. pmc Majority rules with random tie-breaking in Boolean gene regulatory networks
    Claudine Chaouiya
    Instituto Gulbenkian de Ciência, Oeiras, Portugal
    PLoS ONE 8:e69626. 2013
    ....
  3. pmc SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
    Claudine Chaouiya
    Instituto Gulbenkian de Ciencia, Rua da Quinta Grande 6, 2780 156 Oeiras, Portugal
    BMC Syst Biol 7:135. 2013
    ..While numerous groups have developed specific computational tools that provide original methods to analyse qualitative models, a standard format to exchange qualitative models has been missing...