Karolina L Tkaczuk

Summary

Affiliation: International Institute of Molecular and Cell Biology
Country: Poland

Publications

  1. pmc Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis
    Karolina L Tkaczuk
    Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Trojdena 4, 02 109 Warsaw, Poland
    BMC Evol Biol 6:6. 2006
  2. pmc Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases
    Karolina L Tkaczuk
    Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland
    BMC Bioinformatics 8:73. 2007
  3. pmc The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase
    Elzbieta Purta
    Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul ks, Trojdena 4, 02 109 Warsaw, Poland
    BMC Mol Biol 7:23. 2006
  4. doi Trm13p, the tRNA:Xm4 modification enzyme from Saccharomyces cerevisiae is a member of the Rossmann-fold MTase superfamily: prediction of structure and active site
    Karolina L Tkaczuk
    International Institute of Molecular and Cell Biology, Trojdena 4, Warsaw, Poland
    J Mol Model 16:599-606. 2010
  5. ncbi FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6
    Jan Kosinski
    International Institute of Molecular and Cell Biology, Warsaw, Poland
    Proteins 61:106-13. 2005

Detail Information

Publications5

  1. pmc Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis
    Karolina L Tkaczuk
    Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Trojdena 4, 02 109 Warsaw, Poland
    BMC Evol Biol 6:6. 2006
    ..However, little is known about the details of the structure and the mechanism of action of this enzyme, and about its phylogenetic origin...
  2. pmc Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases
    Karolina L Tkaczuk
    Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland
    BMC Bioinformatics 8:73. 2007
    ..However, no comprehensive comparative analysis of these proteins has been carried out to classify them based on structural and evolutionary criteria and to guide functional predictions...
  3. pmc The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase
    Elzbieta Purta
    Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul ks, Trojdena 4, 02 109 Warsaw, Poland
    BMC Mol Biol 7:23. 2006
    ....
  4. doi Trm13p, the tRNA:Xm4 modification enzyme from Saccharomyces cerevisiae is a member of the Rossmann-fold MTase superfamily: prediction of structure and active site
    Karolina L Tkaczuk
    International Institute of Molecular and Cell Biology, Trojdena 4, Warsaw, Poland
    J Mol Model 16:599-606. 2010
    ..A molecular model of the Trm13p structure has been constructed and evaluated for potential accuracy using model quality assessment methods. The predicted structure will facilitate experimental analyses of the Trm13p mechanism of action...
  5. ncbi FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6
    Jan Kosinski
    International Institute of Molecular and Cell Biology, Warsaw, Poland
    Proteins 61:106-13. 2005
    ....