Ersin Emre Oren

Summary

Affiliation: TOBB University of Economics and Technology
Location: Ankara, Turkey
URL: http://eeoren.etu.edu.tr/
Summary:
MATERIALS SCIENCE: A.Theoretical/Computational Materials Science: Irreversible thermodynamics of surfaces and interfaces; Continuum mechanics; Boundary and Finite element methods; Electromigration; Internal friction; Sintering; Thin film growth modes (Volmer-Weber, Frank-van der Merwe, Stranski-Krastanov); Fabricating epitaxial nanoscale structures (quantum dots); Mechanical behavior of micro- and nano-size materials. B.High-Tech Ceramics: Ceramic powders, and Ceramic powder synthesis techniques. PHYSICS: A.Solid State Physics: Electrical, magnetic and optical properties of materials. B.Astronomy: Amateur observations.

BIOMIMETICS / BIONANOTECHNOLOGY: A. Molecular Biology: Protein structure prediction: Homology and template based modeling; Atomistic molecular dynamics modeling, Ab initio quantum mechanical calculations, protein-protein interactions (shape complementarity and electrostatic). B.Bioinformatics: Protein/Peptide knowledge (sequence)-based design and characterization.
Publications:
E.E. Oren, R. Notman, I.W. Kim, J.S. Evans, T.R. Walsh, R. Samudrala, C. Tamerler & M. Sarikaya. “Probing the molecular mechanisms of quartz-binding peptides” Langmuir, 26, 11003-11009(2010). doi:10.1021/la100049s
T.O. Ogurtani, A. Celik & E.E. Oren. “Generic role of the anisotropic surface free energy on the morphological evolution in a strained-heteroepitaxial solid droplet on rigid substrates” Journal of Applied Physics, 108, 103516 (2010). doi:10.1063/1.3512970
R. Notman, E.E. Oren, C. Tamerler, M. Sarikaya, R. Samudrala & T. R. Walsh. “Solution studies of strong and weak quartz-binding peptides using replica exchange molecular dynamics” Biomacromolecules, 11, 3266-3274 (2010). doi:10.1021/bm100646z
T.O. Ogurtani, A. Celik & E.E. Oren. “Morphological evolution in a strained-heteroepitaxial solid droplet on a rigid substrate: Dynamical simulations” Journal of Applied Physics, 108, 063527 (2010). doi:10.1063/1.3483937

Editorially chosen to appear in the Virtual Journal of Nanoscale Science & Technology September 27, 2010.

A. Dezieck, O. Acton, K. Leong, E.E. Oren, H. Ma, C. Tamerler, M. Sarikaya & A.K.-Y. Jen. “Threshold voltage control in organic thin film transistors with dielectric layer modified by a genetically engineered polypeptide” Applied Physics Letters, 97, 013307(2010). doi:10.1063/1.3459978
C. Tamerler, D. Khatayevich, M. Gungormus, T. Kacar, E.E. Oren, M. Hnilova & M. Sarikaya. “Molecular biomimetics: Gepi-based biological routes to technology” Biopolymers: Peptide Science, 94, 78-94 (2010). doi:10.1002/bip.21368
C.R. So, J.L. Kulp, E.E. Oren, H. Zareie, C. Tamerler, J.S. Evans & M. Sarikaya. “Molecular recognition and supramolecular self-assembly of a genetically engineered gold binding peptide on Au{111}” ACS Nano, 3, 1525-1531 (2009). doi:10.1021/nn900171s
T. Kacar, J. Ray, M. Gungormus, E.E. Oren, C. Tamerler & M. Sarikaya. “Quartz binding peptides used as linkers for making multi-(bio)functional micro-patterned systems” Advanced Materials, 21, 295-299(2009). doi:10.1002/adma.
M. Hnilova, E.E. Oren, U.O.S. Seker, B. Wilson, S. Collino, J.S. Evans, C. Tamerler & M. Sarikaya. “Effect of molecular conformations on adsorption behavior of gold binding peptides” Langmuir, 24, 12440-12445(2008). doi:10.1021/la801468c
T.O. Ogurtani, O. Akyildiz & E.E. Oren. “Morphological evolution of tilted grain-boundary thermal grooving by surface diffusion in bicrystal thin solid films having strong anisotropic surface Gibbs free energy” Journal of Applied Physics, 104, 013518 (2008). doi:10.1063/1.2952520
J.S. Evans, R. Samudrala, T. Walsh, E.E. Oren & C. Tamerler. “The molecular design of inorganic-binding polypeptides” MRS Bulletin, 33, (5) 514-518 (2008). (Cover designed by EEO) doi:10.1557/mrs2008.103
E.E. Oren, C. Tamerler, D. Sahin, M. Hnilova, U.O.S. Seker, M. Sarikaya & R. Samudrala. “A novel knowledge-based approach to design inorganic-binding peptides” Bioinformatics, 23, (21), 2816-2822 (2007). doi:10.1093/bioinformatics/btm436
T.O. Ogurtani, A. Celik & E.E. Oren. “Morphological evolution of edge-hillocks on single crystal films having anisotropic drift-diffusion under the capillary and electromigration forces” Thin Solid Films, 515 (5), 2974-2983 (2007). doi:10.1016/j.tsf.2006.08.020
U.O.S. Seker, B. Wilson, S. Dincer, I.W. Kim, E.E. Oren, J.S. Evans, C. Tamerler, & M. Sarikaya. “Adsorption behavior of linear and cyclic genetically engineered platinum binding peptides” Langmuir, 23, 7895-7900 (2007). doi:10.1021/la700446g
C. Tamerler, M. Duman, E.E. Oren, M. Gungormus, X. Xiong, B.A. Parviz & M. Sarikaya. “Materials specificity and directed assembly of a gold binding peptide” Small, 2 (11), 1372-1378 (2006). doi:10.1002/smll.
C. Tamerler, E.E. Oren, M. Duman, E. Venkatasubramanian & M. Sarikaya. “Adsorption kinetics of an engineered gold binding peptide by surface plasmon resonance spectroscopy and a quartz crystal microbalance” Langmuir, 22, 7712-7718 (2006). doi:10.1021/la0606897
E.E. Oren, C. Tamerler & M. Sarikaya. “Metal recognition of septapeptides via polypod molecular architecture” Nano Letters, 5 (3), 415-419 (2005). doi:10.1021/nl048425x
T.O. Ogurtani & E.E. Oren. “Irreversible thermodynamics of triple junctions during the intergranular void motion under the electromigration forces” International Journal of Solids and Structures, 42 (13), 3918-3952 (2005). doi:10.1016/j.ijsolstr.2004.11.013
T.O. Ogurtani & E.E. Oren. “Electromigration-induced void grain-boundary interactions: the mean time to failure for copper interconnects with bamboo and near-bamboo structures” Journal of Applied Physics, 96 (12), 7246-7253 (2004). doi:10.1063/1.1815389
A. Kalkanli & E.E. Oren. “Effect of spraying rate on microstructure of spray deposited Al-Fe-V-Si alloy” Powder Metallurgy, 46 (4), 324-328 (2003). doi:10.1179/
T.O. Ogurtani, M.R. Gungor & E.E. Oren. “Simulation of dislocation damping spectra associated with the collective motion of point defects and kink chain subjected to the bulk segregation” Journal of Applied Physics, 91 (4), 1860-1870 (2002). doi:10.1063/1.1429769
T.O. Ogurtani & E.E. Oren. “Computer simulation of void growth dynamics under the action of electromigration and capillary forces in narrow thin interconnects” Journal of Applied Physics, 90 (3), 1564-1572 (2001). doi:10.1063/1.1382835
E.E. Oren & A.C. Tas. “Hydrothermal synthesis of pure & Dy doped BaTiO3 powders at 90 °C” Metallurgical and Materials Transactions B, 30, 1089-93 (1999). doi:10.1007/s11663-999-0115-5
E.E. Oren, E. Taspinar & A.C. Tas. “Preparation of lead zirconate (PbZrO3) by homogeneous precipitation and calcinations” Journal of American Ceramic Society, 80 (10), 2714-2716 (1997). doi:10.1111/j.1151-2916.1997.tb03181.x

Publications

  1. ncbi request reprint Metal recognition of septapeptides via polypod molecular architecture
    Ersin Emre Oren
    Materials Science and Engineering and Chemical Engineering, University of Washington, Seattle, Washington 98195, USA
    Nano Lett 5:415-9. 2005
  2. ncbi request reprint Adsorption kinetics of an engineered gold binding Peptide by surface plasmon resonance spectroscopy and a quartz crystal microbalance
    Candan Tamerler
    Material Science and Engineering, University of Washington, Seattle, Washington 98195, USA
    Langmuir 22:7712-8. 2006
  3. ncbi request reprint Materials specificity and directed assembly of a gold-binding peptide
    Candan Tamerler
    Materials Science and Engineering Department, Roberts Hall, Box 352120, University of Washington, Seattle, WA 98195, USA
    Small 2:1372-8. 2006
  4. ncbi request reprint Adsorption behavior of linear and cyclic genetically engineered platinum binding peptides
    Urartu Ozgur Safak Seker
    Genetically Engineered Materials Science and Engineering Center, Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA
    Langmuir 23:7895-900. 2007
  5. ncbi request reprint A novel knowledge-based approach to design inorganic-binding peptides
    Ersin Emre Oren
    Materials Science and Engineering Department, University of Washington, Seattle, USA
    Bioinformatics 23:2816-22. 2007
  6. doi request reprint Molecular recognition and supramolecular self-assembly of a genetically engineered gold binding peptide on Au{111}
    Christopher R So
    Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, WA 98105, USA
    ACS Nano 3:1525-31. 2009
  7. doi request reprint Molecular biomimetics: GEPI-based biological routes to technology
    Candan Tamerler
    Genetically Engineered Materials Science and Engineering Center, University of Washington, Seattle, WA 98195, USA
    Biopolymers 94:78-94. 2010
  8. doi request reprint Probing the molecular mechanisms of quartz-binding peptides
    Ersin Emre Oren
    Department of Materials Science and Engineering, University of Washington, Seattle, Washington, USA
    Langmuir 26:11003-9. 2010

Collaborators

Detail Information

Publications8

  1. ncbi request reprint Metal recognition of septapeptides via polypod molecular architecture
    Ersin Emre Oren
    Materials Science and Engineering and Chemical Engineering, University of Washington, Seattle, Washington 98195, USA
    Nano Lett 5:415-9. 2005
    ..g., charged or polar groups (e.g., hydroxyl and amine). These results are highly consistent with the experimental binding characteristics of the Pt binders with various degrees of affinities...
  2. ncbi request reprint Adsorption kinetics of an engineered gold binding Peptide by surface plasmon resonance spectroscopy and a quartz crystal microbalance
    Candan Tamerler
    Material Science and Engineering, University of Washington, Seattle, Washington 98195, USA
    Langmuir 22:7712-8. 2006
    ..The results demonstrate the potential utilization of genetically engineered inorganic surface-specific peptides as molecular substrates due to their binding specificity, stability, and functionality in an aqueous-based environment...
  3. ncbi request reprint Materials specificity and directed assembly of a gold-binding peptide
    Candan Tamerler
    Materials Science and Engineering Department, Roberts Hall, Box 352120, University of Washington, Seattle, WA 98195, USA
    Small 2:1372-8. 2006
    ....
  4. ncbi request reprint Adsorption behavior of linear and cyclic genetically engineered platinum binding peptides
    Urartu Ozgur Safak Seker
    Genetically Engineered Materials Science and Engineering Center, Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA
    Langmuir 23:7895-900. 2007
    ....
  5. ncbi request reprint A novel knowledge-based approach to design inorganic-binding peptides
    Ersin Emre Oren
    Materials Science and Engineering Department, University of Washington, Seattle, USA
    Bioinformatics 23:2816-22. 2007
    ..We further show that our approach is a general one and can be used to design new sequences that bind to a given inorganic solid with predictable and enhanced affinity...
  6. doi request reprint Molecular recognition and supramolecular self-assembly of a genetically engineered gold binding peptide on Au{111}
    Christopher R So
    Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, WA 98105, USA
    ACS Nano 3:1525-31. 2009
    ....
  7. doi request reprint Molecular biomimetics: GEPI-based biological routes to technology
    Candan Tamerler
    Genetically Engineered Materials Science and Engineering Center, University of Washington, Seattle, WA 98195, USA
    Biopolymers 94:78-94. 2010
    ....
  8. doi request reprint Probing the molecular mechanisms of quartz-binding peptides
    Ersin Emre Oren
    Department of Materials Science and Engineering, University of Washington, Seattle, Washington, USA
    Langmuir 26:11003-9. 2010
    ..The work herein describes molecular conformations inherent in material-specific peptides and provides fundamental insight into the atomistic understanding of peptide/solid interfaces...