Geir Kjetil Sandve

Summary

Affiliation: University of Oslo
Country: Norway

Publications

  1. ncbi Identifying elemental genomic track types and representing them uniformly
    Sveinung Gundersen
    Department of Tumor Biology, The Norwegian Radium Hospital, Oslo University Hospital, Montebello, 0310 Oslo, Norway
    BMC Bioinformatics 12:494. 2011
  2. ncbi Sequential Monte Carlo multiple testing
    Geir Kjetil Sandve
    Department of Informatics, University of Oslo, Oslo, Norway
    Bioinformatics 27:3235-41. 2011
  3. ncbi The Genomic HyperBrowser: inferential genomics at the sequence level
    Geir K Sandve
    Department of Informatics, University of Oslo, Blindern, 0316 Oslo, Norway
    Genome Biol 11:R121. 2010
  4. ncbi The differential disease regulome
    Geir K Sandve
    Department of Informatics, University of Oslo, Blindern, 0316 Oslo, Norway
    BMC Genomics 12:353. 2011
  5. ncbi Compo: composite motif discovery using discrete models
    Geir Kjetil Sandve
    Department of Computer and Information Science, Norwegian University of Science and Technology, Trondheim, Norway
    BMC Bioinformatics 9:527. 2008
  6. ncbi Improved benchmarks for computational motif discovery
    Geir Kjetil Sandve
    Department of Computer and Information Science, Norwegian University of Science and Technology NTNU, Trondheim, Norway
    BMC Bioinformatics 8:193. 2007
  7. ncbi Segmentation of DNA sequences into twostate regions and melting fork regions
    Eivind Tøstesen
    Department of Medical Informatics, Norwegian Radium Hospital, N 0310 Oslo, Norway Department of Mathematics, University of Oslo, N 0316 Oslo, Norway
    J Phys Condens Matter 21:034109. 2009

Collaborators

Detail Information

Publications7

  1. ncbi Identifying elemental genomic track types and representing them uniformly
    Sveinung Gundersen
    Department of Tumor Biology, The Norwegian Radium Hospital, Oslo University Hospital, Montebello, 0310 Oslo, Norway
    BMC Bioinformatics 12:494. 2011
    ..The issue of whether and how the multitude of formats reflects varying underlying characteristics of data has to our knowledge not previously been systematically treated...
  2. ncbi Sequential Monte Carlo multiple testing
    Geir Kjetil Sandve
    Department of Informatics, University of Oslo, Oslo, Norway
    Bioinformatics 27:3235-41. 2011
    ..Often, complex Monte Carlo simulation is required, sometimes within a large-scale multiple testing setting. The resulting computational costs may be prohibitively high...
  3. ncbi The Genomic HyperBrowser: inferential genomics at the sequence level
    Geir K Sandve
    Department of Informatics, University of Oslo, Blindern, 0316 Oslo, Norway
    Genome Biol 11:R121. 2010
    ..The Genomic HyperBrowser implements the approach and is available at http://hyperbrowser.uio.no...
  4. ncbi The differential disease regulome
    Geir K Sandve
    Department of Informatics, University of Oslo, Blindern, 0316 Oslo, Norway
    BMC Genomics 12:353. 2011
    ..Furthermore, existing pipelines for related large-scale analysis are tailored for particular sources of input data, and there is a need for generic methodology for integrating complementary sources of genomic information...
  5. ncbi Compo: composite motif discovery using discrete models
    Geir Kjetil Sandve
    Department of Computer and Information Science, Norwegian University of Science and Technology, Trondheim, Norway
    BMC Bioinformatics 9:527. 2008
    ..In recent years there has been increased attention towards the discovery of composite motifs, typically occurring in cis-regulatory regions of genes...
  6. ncbi Improved benchmarks for computational motif discovery
    Geir Kjetil Sandve
    Department of Computer and Information Science, Norwegian University of Science and Technology NTNU, Trondheim, Norway
    BMC Bioinformatics 8:193. 2007
    ..Therefore, robust assessment of motif discovery methods becomes important, both for validation of existing tools and for identification of promising directions for future research...
  7. ncbi Segmentation of DNA sequences into twostate regions and melting fork regions
    Eivind Tøstesen
    Department of Medical Informatics, Norwegian Radium Hospital, N 0310 Oslo, Norway Department of Mathematics, University of Oslo, N 0316 Oslo, Norway
    J Phys Condens Matter 21:034109. 2009
    ..We expect this work to drive our understanding of DNA melting domains one step further...