Anders Lanzen

Summary

Affiliation: University of Bergen
Location: Bergen, Norway

Publications

  1. ncbi The Taverna Interaction Service: enabling manual interaction in workflows
    Anders Lanzen
    Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, 5008 Bergen, Norway
    Bioinformatics 24:1118-20. 2008
  2. ncbi New insight into stratification of anaerobic methanotrophs in cold seep sediments
    Irene Roalkvam
    Department of Biology, Centre for Geobiology, University of Bergen, Norway
    FEMS Microbiol Ecol 78:233-43. 2011
  3. ncbi Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA
    Anders Lanzen
    Department of Biology and Centre for Geobiology, University of Bergen, Bergen, Norway
    FEMS Microbiol Ecol 77:577-89. 2011
  4. ncbi Characterisation of the coccolithovirus intein
    Michael J Allen
    Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth, PL1 3DH, UK
    Mar Genomics 4:1-7. 2011
  5. ncbi Removing noise from pyrosequenced amplicons
    Christopher Quince
    Department of Civil Engineering, University of Glasgow, Rankine Building, Oakfield Avenue, Glasgow G12 8LT, UK
    BMC Bioinformatics 12:38. 2011
  6. ncbi Effects of short-term starvation on ghrelin, GH-IGF system, and IGF-binding proteins in Atlantic salmon
    E M Hevrøy
    National Institute of Nutrition and Seafood Research NIFES, Nordnes, Bergen, Norway
    Fish Physiol Biochem 37:217-32. 2011
  7. ncbi Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim
    Susanne Balzer
    Institute of Marine Research, University of Bergen, Bergen, Norway
    Bioinformatics 26:i420-5. 2010
  8. ncbi Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context
    Rita Bartossek
    Department of Biology, Centre for Geobiology, University of Bergen, PO Box 7803, 5020 Bergen, Norway
    Environ Microbiol 12:1075-88. 2010
  9. ncbi Identification of immune related genes in Atlantic halibut (Hippoglossus hippoglossus L.) following in vivo antigenic and in vitro mitogenic stimulation
    Sonal Patel
    Institute of Marine Research IMR, Bergen, Norway
    Fish Shellfish Immunol 27:729-38. 2009
  10. ncbi Accurate determination of microbial diversity from 454 pyrosequencing data
    Christopher Quince
    Department of Civil Engineering, Rankine Building, University of Glasgow, Glasgow, UK
    Nat Methods 6:639-41. 2009

Detail Information

Publications13

  1. ncbi The Taverna Interaction Service: enabling manual interaction in workflows
    Anders Lanzen
    Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, 5008 Bergen, Norway
    Bioinformatics 24:1118-20. 2008
    ..AVAILABILITY: Taverna, the Interaction Service plug-in and web application are available as open source and can be downloaded from http://taverna.sourceforge.net/..
  2. ncbi New insight into stratification of anaerobic methanotrophs in cold seep sediments
    Irene Roalkvam
    Department of Biology, Centre for Geobiology, University of Bergen, Norway
    FEMS Microbiol Ecol 78:233-43. 2011
    ..In intermediate horizons, typical microbial groups associated with methane seeps were recovered. The data are discussed with respect to co-occurring microbial assemblages and interspecies interactions...
  3. ncbi Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA
    Anders Lanzen
    Department of Biology and Centre for Geobiology, University of Bergen, Bergen, Norway
    FEMS Microbiol Ecol 77:577-89. 2011
    ..Further, predicted diversity from RNA samples was consistently lower than that from DNA. In summary, this study illustrates how different methods can provide complementary ecological insights...
  4. ncbi Characterisation of the coccolithovirus intein
    Michael J Allen
    Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth, PL1 3DH, UK
    Mar Genomics 4:1-7. 2011
    ..The biochemical mechanism of its protein splicing activity is hypothesised, and the prevalence of the intein among natural coccolithovirus isolates is tested...
  5. ncbi Removing noise from pyrosequenced amplicons
    Christopher Quince
    Department of Civil Engineering, University of Glasgow, Rankine Building, Oakfield Avenue, Glasgow G12 8LT, UK
    BMC Bioinformatics 12:38. 2011
    ..We use data sets where samples of known diversity have been amplified and sequenced to quantify the effect of each of the sources of error on OTU inflation and to validate these algorithms...
  6. ncbi Effects of short-term starvation on ghrelin, GH-IGF system, and IGF-binding proteins in Atlantic salmon
    E M Hevrøy
    National Institute of Nutrition and Seafood Research NIFES, Nordnes, Bergen, Norway
    Fish Physiol Biochem 37:217-32. 2011
    ..In conclusion, we have shown that circulating ghrelin and ghrelin-1 mRNA is related to changes in energy metabolism in Atlantic salmon...
  7. ncbi Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim
    Susanne Balzer
    Institute of Marine Research, University of Bergen, Bergen, Norway
    Bioinformatics 26:i420-5. 2010
    ..Study design of sequencing projects would benefit from being able to simulate experiments...
  8. ncbi Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context
    Rita Bartossek
    Department of Biology, Centre for Geobiology, University of Bergen, PO Box 7803, 5020 Bergen, Norway
    Environ Microbiol 12:1075-88. 2010
    ..Transcription of the potential archaeal nirK in soil was demonstrated at different water contents, but no significant increase in transcript copy number was observed with increased denitrifying activity...
  9. ncbi Identification of immune related genes in Atlantic halibut (Hippoglossus hippoglossus L.) following in vivo antigenic and in vitro mitogenic stimulation
    Sonal Patel
    Institute of Marine Research IMR, Bergen, Norway
    Fish Shellfish Immunol 27:729-38. 2009
    ....
  10. ncbi Accurate determination of microbial diversity from 454 pyrosequencing data
    Christopher Quince
    Department of Civil Engineering, Rankine Building, University of Glasgow, Glasgow, UK
    Nat Methods 6:639-41. 2009
    ..We pyrosequenced a known mixture of microbial 16S rDNA sequences extracted from a lake and found that without noise reduction the number of operational taxonomic units is overestimated but using PyroNoise it can be accurately calculated...
  11. ncbi Gene expression profiling in Atlantic cod (Gadus morhua L.) from two contaminated sites using a custom-made cDNA microarray
    Kai K Lie
    National Institute of Nutrition and Seafood Research, Nordnesboder 2, N 5005 Bergen, Norway
    Environ Toxicol Chem 28:1711-21. 2009
    ..As expected, farmed fish displayed less variation in gene expression compared to the wild fish. Pearson correlation divided the farmed cod and natural cod into two principal clusters...
  12. ncbi Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome
    Tim Urich
    Centre of Geobiology, Department of Biology, University of Bergen, Bergen, Norway
    PLoS ONE 3:e2527. 2008
    ..Experimental approaches studying these systems usually focus on either the soil community's taxonomic structure or its functional characteristics. Many methods target DNA as marker molecule and use PCR for amplification...
  13. ncbi The genome sequence of Atlantic cod reveals a unique immune system
    Bastiaan Star
    Centre for Ecological and Evolutionary Synthesis, Department of Biology, University of Oslo, PO Box 1066, Blindern, N 0316 Oslo, Norway
    Nature 477:207-10. 2011
    ..These observations affect fundamental assumptions about the evolution of the adaptive immune system and its components in vertebrates...