Karin Lagesen

Summary

Affiliation: University of Oslo
Country: Norway

Publications

  1. pmc RNAmmer: consistent and rapid annotation of ribosomal RNA genes
    Karin Lagesen
    Centre for Molecular Biology and Neuroscience and Institute of Medical Microbiology, University of Oslo, NO 0027 Oslo, Norway
    Nucleic Acids Res 35:3100-8. 2007
  2. pmc Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays
    Gard O S Thomassen
    Centre for Molecular Biology and Neuroscience, Institute of Medical Microbiology, University of Oslo, Oslo, Norway
    PLoS ONE 4:e5943. 2009
  3. pmc From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains
    Ave Tooming-Klunderud
    University of Oslo, Centre for Ecological and Evolutionary Synthesis CEES, Department of Biosciences, Oslo, Norway
    Appl Environ Microbiol 79:6803-12. 2013
  4. pmc Genome dynamics in major bacterial pathogens
    Ole Herman Ambur
    Centre for Molecular Biology and Neuroscience, Institute of Microbiology, University of Oslo, Oslo University Hospital, Norway
    FEMS Microbiol Rev 33:453-70. 2009
  5. pmc Alterations of microbiota in urine from women with interstitial cystitis
    Huma Siddiqui
    Department of Biology, Centre for Ecological and Evolutionary Synthesis CEES, University of Oslo, P, O, Box 1066, Blindern, 0316, Oslo, Norway
    BMC Microbiol 12:205. 2012
  6. pmc Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche
    Eric J de Muinck
    Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Oslo, Norway
    BMC Genomics 14:81. 2013
  7. pmc Biased distribution of DNA uptake sequences towards genome maintenance genes
    Tonje Davidsen
    Centre for Molecular Biology and Neuroscience and Institute of Microbiology, University of Oslo, Rikshospitalet, N 0027 Oslo, Norway
    Nucleic Acids Res 32:1050-8. 2004
  8. pmc Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
    Huma Siddiqui
    Centre for Ecological and Evolutionary Synthesis, Department of Biology, University of Oslo, P O Box 1066 Blindern, 0316 Oslo, Norway
    BMC Microbiol 11:244. 2011
  9. ncbi request reprint Genome update: tRNAs in sequenced microbial genomes
    David W Ussery
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Microbiology 150:1603-6. 2004
  10. ncbi request reprint Genome update: rRNAs in sequenced microbial genomes
    David W Ussery
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, Lyngby, DK 2800, Denmark
    Microbiology 150:1113-5. 2004

Detail Information

Publications10

  1. pmc RNAmmer: consistent and rapid annotation of ribosomal RNA genes
    Karin Lagesen
    Centre for Molecular Biology and Neuroscience and Institute of Medical Microbiology, University of Oslo, NO 0027 Oslo, Norway
    Nucleic Acids Res 35:3100-8. 2007
    ..Novel, unannotated rRNAs are also predicted in many genomes. The software as well as the genome analysis results are available at the CBS web server...
  2. pmc Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays
    Gard O S Thomassen
    Centre for Molecular Biology and Neuroscience, Institute of Medical Microbiology, University of Oslo, Oslo, Norway
    PLoS ONE 4:e5943. 2009
    ....
  3. pmc From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains
    Ave Tooming-Klunderud
    University of Oslo, Centre for Ecological and Evolutionary Synthesis CEES, Department of Biosciences, Oslo, Norway
    Appl Environ Microbiol 79:6803-12. 2013
    ..Further, the results shed new light on the discussion of the role of horizontal gene transfer in the sporadic distribution of large gene clusters in cyanobacteria, as well as the appearance of red and green strains. ..
  4. pmc Genome dynamics in major bacterial pathogens
    Ole Herman Ambur
    Centre for Molecular Biology and Neuroscience, Institute of Microbiology, University of Oslo, Oslo University Hospital, Norway
    FEMS Microbiol Rev 33:453-70. 2009
    ....
  5. pmc Alterations of microbiota in urine from women with interstitial cystitis
    Huma Siddiqui
    Department of Biology, Centre for Ecological and Evolutionary Synthesis CEES, University of Oslo, P, O, Box 1066, Blindern, 0316, Oslo, Norway
    BMC Microbiol 12:205. 2012
    ..The taxonomical composition, richness and diversity of the IC microbiota were determined and compared to the microbial profile of asymptomatic healthy female (HF) urine...
  6. pmc Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche
    Eric J de Muinck
    Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Oslo, Norway
    BMC Genomics 14:81. 2013
    ..An important step toward achieving a more complete understanding of E.coli biology entails elucidating relationships between gene content and adaptation to the ecological niche...
  7. pmc Biased distribution of DNA uptake sequences towards genome maintenance genes
    Tonje Davidsen
    Centre for Molecular Biology and Neuroscience and Institute of Microbiology, University of Oslo, Rikshospitalet, N 0027 Oslo, Norway
    Nucleic Acids Res 32:1050-8. 2004
    ..Furthermore, uptake of such genes could provide a mechanism for facilitated recovery from DNA damage after genotoxic stress...
  8. pmc Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
    Huma Siddiqui
    Centre for Ecological and Evolutionary Synthesis, Department of Biology, University of Oslo, P O Box 1066 Blindern, 0316 Oslo, Norway
    BMC Microbiol 11:244. 2011
    ..Here, we present a comprehensive in-depth study of bacterial 16S rDNA sequences associated with urine from healthy females by means of culture-independent high-throughput sequencing techniques...
  9. ncbi request reprint Genome update: tRNAs in sequenced microbial genomes
    David W Ussery
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, DK 2800 Kgs Lyngby, Denmark
    Microbiology 150:1603-6. 2004
  10. ncbi request reprint Genome update: rRNAs in sequenced microbial genomes
    David W Ussery
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, Lyngby, DK 2800, Denmark
    Microbiology 150:1113-5. 2004