Karin Lagesen

Summary

Affiliation: University of Oslo
Country: Norway

Publications

  1. ncbi RNAmmer: consistent and rapid annotation of ribosomal RNA genes
    Karin Lagesen
    Centre for Molecular Biology and Neuroscience and Institute of Medical Microbiology, University of Oslo, NO 0027 Oslo, Norway
    Nucleic Acids Res 35:3100-8. 2007
  2. ncbi Alterations of microbiota in urine from women with interstitial cystitis
    Huma Siddiqui
    Department of Biology, Centre for Ecological and Evolutionary Synthesis CEES, University of Oslo, P, O, Box 1066, Blindern, 0316, Oslo, Norway
    BMC Microbiol 12:205. 2012
  3. ncbi Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays
    Gard O S Thomassen
    Centre for Molecular Biology and Neuroscience, Institute of Medical Microbiology, University of Oslo, Oslo, Norway
    PLoS ONE 4:e5943. 2009
  4. ncbi Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
    Huma Siddiqui
    Centre for Ecological and Evolutionary Synthesis, Department of Biology, University of Oslo, P O Box 1066 Blindern, 0316 Oslo, Norway
    BMC Microbiol 11:244. 2011
  5. ncbi Genome dynamics in major bacterial pathogens
    Ole Herman Ambur
    Centre for Molecular Biology and Neuroscience, Institute of Microbiology, University of Oslo, Oslo University Hospital, Norway
    FEMS Microbiol Rev 33:453-70. 2009
  6. ncbi Biased distribution of DNA uptake sequences towards genome maintenance genes
    Tonje Davidsen
    Centre for Molecular Biology and Neuroscience and Institute of Microbiology, University of Oslo, Rikshospitalet, N-0027 Oslo, Norway
    Nucleic Acids Res 32:1050-8. 2004
  7. ncbi Genome update: rRNAs in sequenced microbial genomes
    David W Ussery
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, Lyngby, DK-2800, Denmark
    Microbiology 150:1113-5. 2004
  8. ncbi Genome update: tRNAs in sequenced microbial genomes
    David W Ussery
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
    Microbiology 150:1603-6. 2004

Collaborators

Detail Information

Publications8

  1. ncbi RNAmmer: consistent and rapid annotation of ribosomal RNA genes
    Karin Lagesen
    Centre for Molecular Biology and Neuroscience and Institute of Medical Microbiology, University of Oslo, NO 0027 Oslo, Norway
    Nucleic Acids Res 35:3100-8. 2007
    ..Novel, unannotated rRNAs are also predicted in many genomes. The software as well as the genome analysis results are available at the CBS web server...
  2. ncbi Alterations of microbiota in urine from women with interstitial cystitis
    Huma Siddiqui
    Department of Biology, Centre for Ecological and Evolutionary Synthesis CEES, University of Oslo, P, O, Box 1066, Blindern, 0316, Oslo, Norway
    BMC Microbiol 12:205. 2012
    ..The taxonomical composition, richness and diversity of the IC microbiota were determined and compared to the microbial profile of asymptomatic healthy female (HF) urine...
  3. ncbi Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays
    Gard O S Thomassen
    Centre for Molecular Biology and Neuroscience, Institute of Medical Microbiology, University of Oslo, Oslo, Norway
    PLoS ONE 4:e5943. 2009
    ....
  4. ncbi Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
    Huma Siddiqui
    Centre for Ecological and Evolutionary Synthesis, Department of Biology, University of Oslo, P O Box 1066 Blindern, 0316 Oslo, Norway
    BMC Microbiol 11:244. 2011
    ..Here, we present a comprehensive in-depth study of bacterial 16S rDNA sequences associated with urine from healthy females by means of culture-independent high-throughput sequencing techniques...
  5. ncbi Genome dynamics in major bacterial pathogens
    Ole Herman Ambur
    Centre for Molecular Biology and Neuroscience, Institute of Microbiology, University of Oslo, Oslo University Hospital, Norway
    FEMS Microbiol Rev 33:453-70. 2009
    ....
  6. ncbi Biased distribution of DNA uptake sequences towards genome maintenance genes
    Tonje Davidsen
    Centre for Molecular Biology and Neuroscience and Institute of Microbiology, University of Oslo, Rikshospitalet, N-0027 Oslo, Norway
    Nucleic Acids Res 32:1050-8. 2004
    ..Furthermore, uptake of such genes could provide a mechanism for facilitated recovery from DNA damage after genotoxic stress...
  7. ncbi Genome update: rRNAs in sequenced microbial genomes
    David W Ussery
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, Lyngby, DK-2800, Denmark
    Microbiology 150:1113-5. 2004
  8. ncbi Genome update: tRNAs in sequenced microbial genomes
    David W Ussery
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
    Microbiology 150:1603-6. 2004