Mario Tyago Murakami

Summary

Publications

  1. pmc Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases
    Priscila O de Giuseppe
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, Sao Paulo, Brazil
    PLoS ONE 7:e44282. 2012
  2. pmc Two structurally discrete GH7-cellobiohydrolases compete for the same cellulosic substrate fiber
    Fernando Segato
    Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA
    Biotechnol Biofuels 5:21. 2012
  3. pmc The small heat shock proteins from Acidithiobacillus ferrooxidans: gene expression, phylogenetic analysis, and structural modeling
    Daniela A Ribeiro
    Center for Molecular Biology and Genetic Engineering CBMEG, State University of Campinas UNICAMP, Candido Rondon Avenue 400, 13083 875 Campinas, SP, Brazil
    BMC Microbiol 11:259. 2011
  4. ncbi request reprint The repeat domain of the type III effector protein PthA shows a TPR-like structure and undergoes conformational changes upon DNA interaction
    Mario Tyago Murakami
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, 13083 970, Campinas, SP, Brazil
    Proteins 78:3386-95. 2010
  5. pmc A redox 2-Cys mechanism regulates the catalytic activity of divergent cyclophilins
    Bruna Medéia Campos
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP CP6192, Brazil
    Plant Physiol 162:1311-23. 2013
  6. ncbi request reprint The accessory domain changes the accessibility and molecular topography of the catalytic interface in monomeric GH39 β-xylosidases
    Camila Ramos Santos
    Laboratório Nacional de Biociências LNBio, Centro Nacional de Pesquisa em Energia e Materiais, Rua giuseppe maximo scolfaro, 10000, Campinas SP 13083 970, Brazil
    Acta Crystallogr D Biol Crystallogr 68:1339-45. 2012
  7. doi request reprint Molecular insights into substrate specificity and thermal stability of a bacterial GH5-CBM27 endo-1,4-β-D-mannanase
    Camila Ramos dos Santos
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP, Brazil
    J Struct Biol 177:469-76. 2012
  8. ncbi request reprint Effects of High Pressure Homogenization on the Activity, Stability, Kinetics and Three-Dimensional Conformation of a Glucose Oxidase Produced by Aspergillus niger
    Alline Artigiani Lima Tribst
    Department of Food Technology DTA, School of Food Engineering FEA, University of Campinas UNICAMP, Campinas, SP, Brazil
    PLoS ONE 9:e103410. 2014
  9. pmc Crystallization and preliminary X-ray diffraction analysis of a new xyloglucanase from Xanthomonas campestris pv. campestris
    Evandro Ares de Araújo
    Instituto de Fisica de Sao Carlos, Universidade de Sao Paulo, 400 Trabalhador Saocarlense, 13566 590 Sao Carlos, SP, Brazil
    Acta Crystallogr Sect F Struct Biol Cryst Commun 69:676-8. 2013

Collaborators

  • Igor Polikarpov
  • Alline Artigiani Lima Tribst
  • Evandro Ares de Araújo
  • Junio Cota
  • Bruna Medéia Campos
  • Camila Ramos dos Santos
  • Fernando Segato
  • Priscila O de Giuseppe
  • Camila Ramos Santos
  • Daniela A Ribeiro
  • Marcelo Cristianini
  • Sara Britt Marie Whittaker
  • João Alexandre Ribeiro Gonçalvez Barbosa
  • Marco Antonio Seiki Kadowaki
  • Atílio Tomazini
  • Tatiana de Arruda Campos Brasil de Souza
  • Mariane Noronha Domingues
  • Celso Eduardo Benedetti
  • Mauricio Luis Sforça
  • Ana Carolina de Matos Zeri
  • Andre Luis Berteli Ambrosio
  • Adriana Franco Paes Leme
  • Carlos Alberto Perez
  • André R L Damásio
  • Juliana Moço Corrêa
  • Rolf A Prade
  • Joice Helena Paiva
  • Flavio Augusto Vicente Seixas
  • Camila R Dos Santos
  • Thiago Augusto Gonçalves
  • Carla Cristina Polo
  • Andreia Navarro Meza
  • Andrew J Mort
  • Mariadelourdestm Polizeli
  • Fabio Marcio Squina
  • Nadia H Martins
  • Andreia N Meza
  • Roberto Ruller
  • Humberto D Muniz Pereira
  • Thabata Maria Alvarez
  • Rita de Cássia Garcia Simão
  • Fabio M Squina
  • Rolf Alexander Prade
  • Laura M M Ottoboni
  • Lucio F C Ferraz
  • Luiz E V Del Bem
  • Renato Vicentini

Detail Information

Publications9

  1. pmc Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases
    Priscila O de Giuseppe
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, Sao Paulo, Brazil
    PLoS ONE 7:e44282. 2012
    ..cereus hexameric adenosine phosphorylase (Thr(91)) is responsible for the lack of negative cooperativity of phosphate binding in this enzyme...
  2. pmc Two structurally discrete GH7-cellobiohydrolases compete for the same cellulosic substrate fiber
    Fernando Segato
    Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA
    Biotechnol Biofuels 5:21. 2012
    ..abstract:..
  3. pmc The small heat shock proteins from Acidithiobacillus ferrooxidans: gene expression, phylogenetic analysis, and structural modeling
    Daniela A Ribeiro
    Center for Molecular Biology and Genetic Engineering CBMEG, State University of Campinas UNICAMP, Candido Rondon Avenue 400, 13083 875 Campinas, SP, Brazil
    BMC Microbiol 11:259. 2011
    ....
  4. ncbi request reprint The repeat domain of the type III effector protein PthA shows a TPR-like structure and undergoes conformational changes upon DNA interaction
    Mario Tyago Murakami
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, 13083 970, Campinas, SP, Brazil
    Proteins 78:3386-95. 2010
    ..The results point to a model in which the RD2 structure changes its compactness as it embraces the DNA with the polymorphic diresidues facing the interior of the superhelix oriented toward the nucleotide bases...
  5. pmc A redox 2-Cys mechanism regulates the catalytic activity of divergent cyclophilins
    Bruna Medéia Campos
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP CP6192, Brazil
    Plant Physiol 162:1311-23. 2013
    ..This suggests a new type of allosteric regulation in divergent cyclophilins, involving disulfide bond formation and a loop-displacement mechanism. ..
  6. ncbi request reprint The accessory domain changes the accessibility and molecular topography of the catalytic interface in monomeric GH39 β-xylosidases
    Camila Ramos Santos
    Laboratório Nacional de Biociências LNBio, Centro Nacional de Pesquisa em Energia e Materiais, Rua giuseppe maximo scolfaro, 10000, Campinas SP 13083 970, Brazil
    Acta Crystallogr D Biol Crystallogr 68:1339-45. 2012
    ..These interactions also maintain the accessory domain tightly linked to the catalytic core, which may be important for enzyme function and stability...
  7. doi request reprint Molecular insights into substrate specificity and thermal stability of a bacterial GH5-CBM27 endo-1,4-β-D-mannanase
    Camila Ramos dos Santos
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP, Brazil
    J Struct Biol 177:469-76. 2012
    ....
  8. ncbi request reprint Effects of High Pressure Homogenization on the Activity, Stability, Kinetics and Three-Dimensional Conformation of a Glucose Oxidase Produced by Aspergillus niger
    Alline Artigiani Lima Tribst
    Department of Food Technology DTA, School of Food Engineering FEA, University of Campinas UNICAMP, Campinas, SP, Brazil
    PLoS ONE 9:e103410. 2014
    ..Both fluorescence and circular dichroism revealed conformational changes in the molecular structure of the enzyme that might be associated with the distinct functional and stability behavior of GO. ..
  9. pmc Crystallization and preliminary X-ray diffraction analysis of a new xyloglucanase from Xanthomonas campestris pv. campestris
    Evandro Ares de Araújo
    Instituto de Fisica de Sao Carlos, Universidade de Sao Paulo, 400 Trabalhador Saocarlense, 13566 590 Sao Carlos, SP, Brazil
    Acta Crystallogr Sect F Struct Biol Cryst Commun 69:676-8. 2013
    ..0 and 2.1 Å, respectively. The data were indexed in a hexagonal crystal system with unit-cell parameters a = b = 153.4, c = 84.9 Å. As indicated by molecular-replacement solution, the crystals belonged to space group P6(1)...