E Morett

Summary

Country: Mexico

Publications

  1. pmc Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli
    Alfredo Mendoza-Vargas
    Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, Mexico
    PLoS ONE 4:e7526. 2009
  2. pmc Transcription analysis of central metabolism genes in Escherichia coli. Possible roles of sigma38 in their expression, as a response to carbon limitation
    Leticia Olvera
    Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca Morelos, Mexico
    PLoS ONE 4:e7466. 2009
  3. pmc Genetic changes during a laboratory adaptive evolution process that allowed fast growth in glucose to an Escherichia coli strain lacking the major glucose transport system
    César Aguilar
    Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico UNAM, Cuernavaca, Morelos 62210, Mexico
    BMC Genomics 13:385. 2012
  4. pmc Insights on the evolution of trehalose biosynthesis
    Nelson Avonce
    Centro de Investigación en Biotecnología UAEM, Av Universidad 1001, Col Chamilpa, Cuernavaca 62210, Mexico
    BMC Evol Biol 6:109. 2006
  5. pmc Inferring modules of functionally interacting proteins using the Bond Energy Algorithm
    Ryosuke L A Watanabe
    ITESM Campus Estado de México, Carretera Lago de Guadalupe km 3, 5, Atizapan de Zaragoza, 52926, Mexico
    BMC Bioinformatics 9:285. 2008
  6. doi request reprint Sensitive genome-wide screen for low secondary enzymatic activities: the YjbQ family shows thiamin phosphate synthase activity
    Enrique Morett
    Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, AP 510 3, CP 62250, Cuernavaca, Morelos, Mexico
    J Mol Biol 376:839-53. 2008
  7. ncbi request reprint Systematic discovery of analogous enzymes in thiamin biosynthesis
    Enrique Morett
    Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Av Universidad 2001, Cuernavaca, Morelos, 62210, Mexico
    Nat Biotechnol 21:790-5. 2003
  8. ncbi request reprint Evolution of new protein function: recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrC
    E Morett
    Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca, Mor
    FEBS Lett 433:108-12. 1998
  9. pmc A proposed architecture for the central domain of the bacterial enhancer-binding proteins based on secondary structure prediction and fold recognition
    J Osuna
    Departamento de Reconocimiento Molecular Bioestructura, Universidad Nacional Autonoma de Mexico, Mexico
    Protein Sci 6:543-55. 1997
  10. pmc Transcriptional regulation of the assT-dsbL-dsbI gene cluster in Salmonella enterica serovar Typhi IMSS-1 depends on LeuO, H-NS, and specific growth conditions
    A L Gallego-Hernández
    Departamento de Microbiologia Molecular, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, Mexico
    J Bacteriol 194:2254-64. 2012

Collaborators

  • Berend Snel
  • Peer Bork
  • Jan O Korbel
  • Humberto Flores
  • E Calva
  • J Osuna
  • Alfredo Mendoza-Vargas
  • Leticia Olvera
  • A L Gallego-Hernández
  • César Aguilar
  • Francisco Bolivar
  • Noemí Flores
  • Guillermo Gosset
  • Maricela Olvera
  • Ryosuke L A Watanabe
  • Nelson Avonce
  • P Gaytan
  • R Ciria
  • Ramón de Anda
  • I Hernandez-Lucas
  • L Medina-Aparicio
  • A Vazquez
  • M Fernandez-Mora
  • Fernando Riveros-McKay
  • J A Ramírez-Trujillo
  • M A de la Cruz
  • L Olvera
  • Adelfo Escalante
  • Katy Juarez
  • Julio Collado-Vides
  • Veronica Jimenez-Jacinto
  • Ricardo Grande
  • Juan Carlos Sigala
  • Bruno Contreras-Moreira
  • Blanca Taboada
  • Heladia Salgado
  • Araceli M Huerta
  • Leticia Vega-Alvarado
  • Edgar E Vallejo
  • Gabriel Iturriaga
  • X Soberon
  • J Yanez
  • R Grande
  • E Merino
  • C Abreu-Goodger

Detail Information

Publications12

  1. pmc Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli
    Alfredo Mendoza-Vargas
    Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, Mexico
    PLoS ONE 4:e7526. 2009
    ..coli...
  2. pmc Transcription analysis of central metabolism genes in Escherichia coli. Possible roles of sigma38 in their expression, as a response to carbon limitation
    Leticia Olvera
    Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca Morelos, Mexico
    PLoS ONE 4:e7466. 2009
    ....
  3. pmc Genetic changes during a laboratory adaptive evolution process that allowed fast growth in glucose to an Escherichia coli strain lacking the major glucose transport system
    César Aguilar
    Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico UNAM, Cuernavaca, Morelos 62210, Mexico
    BMC Genomics 13:385. 2012
    ....
  4. pmc Insights on the evolution of trehalose biosynthesis
    Nelson Avonce
    Centro de Investigación en Biotecnología UAEM, Av Universidad 1001, Col Chamilpa, Cuernavaca 62210, Mexico
    BMC Evol Biol 6:109. 2006
    ..However, in recent years it has been shown that although higher plants do not accumulate trehalose at significant levels they have actively transcribed genes encoding the corresponding biosynthetic enzymes...
  5. pmc Inferring modules of functionally interacting proteins using the Bond Energy Algorithm
    Ryosuke L A Watanabe
    ITESM Campus Estado de México, Carretera Lago de Guadalupe km 3, 5, Atizapan de Zaragoza, 52926, Mexico
    BMC Bioinformatics 9:285. 2008
    ..With BEA we create clusters of phylogenetic profiles based on the associations of the surrounding elements of the analyzed data using a metric that considers linked relationships among elements in the data set...
  6. doi request reprint Sensitive genome-wide screen for low secondary enzymatic activities: the YjbQ family shows thiamin phosphate synthase activity
    Enrique Morett
    Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, AP 510 3, CP 62250, Cuernavaca, Morelos, Mexico
    J Mol Biol 376:839-53. 2008
    ..These results support the hypothesis that the enzymatic repertoire of a cell such as E. coli has the potential to perform vast amounts of alternative reactions, which could be exploited to evolve novel or more efficient catalysts...
  7. ncbi request reprint Systematic discovery of analogous enzymes in thiamin biosynthesis
    Enrique Morett
    Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Av Universidad 2001, Cuernavaca, Morelos, 62210, Mexico
    Nat Biotechnol 21:790-5. 2003
    ..The results demonstrate the ability of our computational approach to predict specific functions without taking into account sequence similarity...
  8. ncbi request reprint Evolution of new protein function: recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrC
    E Morett
    Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca, Mor
    FEBS Lett 433:108-12. 1998
    ..Thus, we propose that yhdG and fis were acquired by a lineage ancestral to the gamma proteobacteria in a single horizontal gene transfer event, and later diverged to their present functions...
  9. pmc A proposed architecture for the central domain of the bacterial enhancer-binding proteins based on secondary structure prediction and fold recognition
    J Osuna
    Departamento de Reconocimiento Molecular Bioestructura, Universidad Nacional Autonoma de Mexico, Mexico
    Protein Sci 6:543-55. 1997
    ....
  10. pmc Transcriptional regulation of the assT-dsbL-dsbI gene cluster in Salmonella enterica serovar Typhi IMSS-1 depends on LeuO, H-NS, and specific growth conditions
    A L Gallego-Hernández
    Departamento de Microbiologia Molecular, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, Mexico
    J Bacteriol 194:2254-64. 2012
    ..Thus, the expression of the assT-dsbL-dsbI gene cluster depends on the global regulatory proteins LeuO and H-NS, as well as on specific growth conditions...
  11. ncbi request reprint GeConT: gene context analysis
    R Ciria
    Departamento de Biología Celular y Biocatálisis, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Cuernavaca, 62210 Morelos, Mexico
    Bioinformatics 20:2307-8. 2004
    ..The graphical information of GeConT can be used to analyze genome annotation, functional ortholog identification or to verify the genomic context congruence of any set of genes that share a common property...
  12. ncbi request reprint Improving random mutagenesis by purification of the oligonucleotide variants
    P Gaytan
    Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnologia, Universidad Nacional Autonoma de Mexico, Ap Postal 510 3 Cuernavaca, Morelos 62250, Mexico
    Comb Chem High Throughput Screen 8:537-44. 2005
    ..In the exemplified library described herein, two sub-populations containing mainly triple and quadruple mutants were selected out of five possible sub-populations...