C Notredame

Summary

Affiliation: Medical University of Lublin

Publications

  1. pmc M-Coffee: combining multiple sequence alignment methods with T-Coffee
    Iain M Wallace
    The Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Ireland
    Nucleic Acids Res 34:1692-9. 2006
  2. pmc PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments
    Sebastien Moretti
    Information Genomique et Structurale, CNRS UPR2589, Institute for Structural Biology and Microbiology IBSM, Parc Scientifique de Luminy, 163 Avenue de Luminy, FR 13288, Marseille Cedex 09, France
    Nucleic Acids Res 34:W600-3. 2006
  3. pmc Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
    Fabrice Armougom
    Laboratoire Information Génomique et Structurale, CNRS UPR2589, Institute for Structural Biology and Microbiology IBSM, Parc Scientifique de Luminy, 163 Avenue de Luminy, FR 13288, Marseille Cedex 09, France
    Nucleic Acids Res 34:W604-8. 2006
  4. pmc The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods
    Sebastien Moretti
    Swiss Institute of Bioinformatics, Batiment Genopode, UNIL, CH 101 Lausanne
    Nucleic Acids Res 35:W645-8. 2007
  5. ncbi request reprint T-Coffee: A novel method for fast and accurate multiple sequence alignment
    C Notredame
    National Institute for Medical Research, The Ridgeway, London, NW7 1AA, UK
    J Mol Biol 302:205-17. 2000
  6. pmc Recent evolutions of multiple sequence alignment algorithms
    Cedric Notredame
    Information Genomique et Structurale, CNRS UPR2589, Institute for Structural Biology and Microbiology, Parc Scientifique de Luminy, Marseille, France
    PLoS Comput Biol 3:e123. 2007

Collaborators

Detail Information

Publications6

  1. pmc M-Coffee: combining multiple sequence alignment methods with T-Coffee
    Iain M Wallace
    The Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Ireland
    Nucleic Acids Res 34:1692-9. 2006
    ..Given a collection of pre-computed MSAs, M-Coffee has similar CPU requirements to the original T-Coffee. M-Coffee is a freeware open-source package available from http://www.tcoffee.org/...
  2. pmc PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments
    Sebastien Moretti
    Information Genomique et Structurale, CNRS UPR2589, Institute for Structural Biology and Microbiology IBSM, Parc Scientifique de Luminy, 163 Avenue de Luminy, FR 13288, Marseille Cedex 09, France
    Nucleic Acids Res 34:W600-3. 2006
    ..Protogene can handle protein fragments and will return every CDS coding for a given protein, even if they occur in different genomes. Protogene is available from http://www.tcoffee.org/...
  3. pmc Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
    Fabrice Armougom
    Laboratoire Information Génomique et Structurale, CNRS UPR2589, Institute for Structural Biology and Microbiology IBSM, Parc Scientifique de Luminy, 163 Avenue de Luminy, FR 13288, Marseille Cedex 09, France
    Nucleic Acids Res 34:W604-8. 2006
    ..Providing the suitable structural information is available, Expresso delivers sequence alignments with accuracy comparable with structure-based alignments. The server is available on http://www.tcoffee.org/...
  4. pmc The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods
    Sebastien Moretti
    Swiss Institute of Bioinformatics, Batiment Genopode, UNIL, CH 101 Lausanne
    Nucleic Acids Res 35:W645-8. 2007
    ..M-Coffee is a freeware open source package distributed under a GPL license and it is available either as a standalone package or as a web service from www.tcoffee.org...
  5. ncbi request reprint T-Coffee: A novel method for fast and accurate multiple sequence alignment
    C Notredame
    National Institute for Medical Research, The Ridgeway, London, NW7 1AA, UK
    J Mol Biol 302:205-17. 2000
    ..The improvement, especially clear with the more difficult test cases, is always visible, regardless of the phylogenetic spread of the sequences in the tests...
  6. pmc Recent evolutions of multiple sequence alignment algorithms
    Cedric Notredame
    Information Genomique et Structurale, CNRS UPR2589, Institute for Structural Biology and Microbiology, Parc Scientifique de Luminy, Marseille, France
    PLoS Comput Biol 3:e123. 2007