Tanja Magoc

Summary

Publications

  1. pmc FLASH: fast length adjustment of short reads to improve genome assemblies
    Tanja Magoc
    McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
    Bioinformatics 27:2957-63. 2011
  2. pmc GAGE-B: an evaluation of genome assemblers for bacterial organisms
    Tanja Magoc
    Center for Computational Biology, McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA
    Bioinformatics 29:1718-25. 2013
  3. pmc GAGE: A critical evaluation of genome assemblies and assembly algorithms
    Steven L Salzberg
    McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
    Genome Res 22:557-67. 2012
  4. pmc EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes
    Tanja Magoc
    Center for Computational Biology, McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA
    Evol Bioinform Online 9:127-36. 2013

Detail Information

Publications4

  1. pmc FLASH: fast length adjustment of short reads to improve genome assemblies
    Tanja Magoc
    McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
    Bioinformatics 27:2957-63. 2011
    ..The use of paired-end libraries with a fragment size shorter than twice the read length provides an opportunity to generate much longer reads by overlapping and merging read pairs before assembling a genome...
  2. pmc GAGE-B: an evaluation of genome assemblers for bacterial organisms
    Tanja Magoc
    Center for Computational Biology, McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21025, USA
    Bioinformatics 29:1718-25. 2013
    ..The need to contain costs often results in the creation of only a single sequencing library, which in turn introduces new challenges for genome assembly methods...
  3. pmc GAGE: A critical evaluation of genome assemblies and assembly algorithms
    Steven L Salzberg
    McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
    Genome Res 22:557-67. 2012
    ..To enable others to replicate our results, all of our data and methods are freely available, as are all assemblers used in this study...
  4. pmc EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes
    Tanja Magoc
    Center for Computational Biology, McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA
    Evol Bioinform Online 9:127-36. 2013
    ..SOFTWARE: The EDGE-pro tool is implemented as a pipeline of C++ and Perl programs and is freely available as open-source code at http://www.genomics.jhu.edu/software/EDGE/index.shtml...