Haiwei Luo

Summary

Publications

  1. pmc Predicted protein subcellular localization in dominant surface ocean bacterioplankton
    Haiwei Luo
    Department of Marine Sciences, University of Georgia, Athens, Georgia, USA
    Appl Environ Microbiol 78:6550-7. 2012
  2. pmc Using jackknife to assess the quality of gene order phylogenies
    Jian Shi
    Department of Computer Science and Engineering, University of South Carolina Columbia, SC 29028, USA
    BMC Bioinformatics 11:168. 2010
  3. pmc Gene order phylogeny and the evolution of methanogens
    Haiwei Luo
    Department of Biological Sciences, University of South Carolina, Columbia, SC, USA
    PLoS ONE 4:e6069. 2009
  4. pmc Subcellular localization of marine bacterial alkaline phosphatases
    Haiwei Luo
    Department of Biological Sciences, Marine Science Program, University of South Carolina, Columbia, SC 29208, USA
    Proc Natl Acad Sci U S A 106:21219-23. 2009
  5. doi request reprint Phylogenetic analysis of genome rearrangements among five mammalian orders
    Haiwei Luo
    Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
    Mol Phylogenet Evol 65:871-82. 2012
  6. pmc Genome reduction by deletion of paralogs in the marine cyanobacterium Prochlorococcus
    Haiwei Luo
    Department of Biological Sciences, University of South Carolina, SC, USA
    Mol Biol Evol 28:2751-60. 2011
  7. doi request reprint Assembly-free metagenomic analysis reveals new metabolic capabilities in surface ocean bacterioplankton
    Haiwei Luo
    Department of Marine Sciences, University of Georgia, Athens, GA, 30602, USA
    Environ Microbiol Rep 5:686-96. 2013
  8. pmc Gene order phylogeny of the genus Prochlorococcus
    Haiwei Luo
    Department of Biological Sciences, University of South Carolina, Columbia, SC, USA
    PLoS ONE 3:e3837. 2008
  9. ncbi request reprint Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters
    Haiwei Luo
    Department of Marine Sciences, University of Georgia, Athens, GA, USA
    ISME J 8:1428-39. 2014
  10. doi request reprint Comparing effective population sizes of dominant marine alphaproteobacteria lineages
    Haiwei Luo
    Department of Marine Sciences, University of Georgia, Athens, GA, 30602, USA
    Environ Microbiol Rep 6:167-72. 2014

Collaborators

Detail Information

Publications14

  1. pmc Predicted protein subcellular localization in dominant surface ocean bacterioplankton
    Haiwei Luo
    Department of Marine Sciences, University of Georgia, Athens, Georgia, USA
    Appl Environ Microbiol 78:6550-7. 2012
    ....
  2. pmc Using jackknife to assess the quality of gene order phylogenies
    Jian Shi
    Department of Computer Science and Engineering, University of South Carolina Columbia, SC 29028, USA
    BMC Bioinformatics 11:168. 2010
    ..If gene orders are viewed as one character with a large number of states, traditional bootstrap procedures cannot be applied. Researchers began to use a jackknife resampling method to assess the quality of gene order phylogenies...
  3. pmc Gene order phylogeny and the evolution of methanogens
    Haiwei Luo
    Department of Biological Sciences, University of South Carolina, Columbia, SC, USA
    PLoS ONE 4:e6069. 2009
    ..This study suggests a new classification scheme for methanogens. In addition, it indicates that gene order phylogeny can complement traditional sequence-based methods in addressing taxonomic questions for deep relationships...
  4. pmc Subcellular localization of marine bacterial alkaline phosphatases
    Haiwei Luo
    Department of Biological Sciences, Marine Science Program, University of South Carolina, Columbia, SC 29208, USA
    Proc Natl Acad Sci U S A 106:21219-23. 2009
    ..The abundant extracellular APases could provide bioavailable P for organisms that cannot directly access organophosphates, and thereby increase marine biological productivity and diversity...
  5. doi request reprint Phylogenetic analysis of genome rearrangements among five mammalian orders
    Haiwei Luo
    Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
    Mol Phylogenet Evol 65:871-82. 2012
    ..We discussed the influence of rate differences among lineages and other factors that may contribute to different resolutions of mammalian ordinal relationships by different methods of phylogenetic reconstruction...
  6. pmc Genome reduction by deletion of paralogs in the marine cyanobacterium Prochlorococcus
    Haiwei Luo
    Department of Biological Sciences, University of South Carolina, SC, USA
    Mol Biol Evol 28:2751-60. 2011
    ....
  7. doi request reprint Assembly-free metagenomic analysis reveals new metabolic capabilities in surface ocean bacterioplankton
    Haiwei Luo
    Department of Marine Sciences, University of Georgia, Athens, GA, 30602, USA
    Environ Microbiol Rep 5:686-96. 2013
    ..These findings raise new hypotheses about microbial roles in energy flux and organic matter transformation in the ocean. ..
  8. pmc Gene order phylogeny of the genus Prochlorococcus
    Haiwei Luo
    Department of Biological Sciences, University of South Carolina, Columbia, SC, USA
    PLoS ONE 3:e3837. 2008
    ..This character was used to resolve the evolutionary history within the genus Prochlorococcus, a group of marine cyanobacteria...
  9. ncbi request reprint Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters
    Haiwei Luo
    Department of Marine Sciences, University of Georgia, Athens, GA, USA
    ISME J 8:1428-39. 2014
    ..The relative importance of drift vs selection in this clade, and perhaps in other marine bacterial clades with streamlined G+C-poor genomes, remains unresolved until more evidence is accumulated. ..
  10. doi request reprint Comparing effective population sizes of dominant marine alphaproteobacteria lineages
    Haiwei Luo
    Department of Marine Sciences, University of Georgia, Athens, GA, 30602, USA
    Environ Microbiol Rep 6:167-72. 2014
    ....
  11. pmc Sizing up metatranscriptomics
    Mary Ann Moran
    Department of Marine Sciences, University of Georgia, Athens, GA 30602 3636, USA
    ISME J 7:237-43. 2013
    ..In this perspective, we review the available data on transcript dynamics in environmental bacteria, and then consider the consequences of a small and transient mRNA inventory for functional metagenomic studies of microbial communities...
  12. doi request reprint Genome content of uncultivated marine Roseobacters in the surface ocean
    Haiwei Luo
    Department of Marine Sciences, University of Georgia, Athens, GA 30602, USA
    Environ Microbiol 14:41-51. 2012
    ....
  13. ncbi request reprint Single-cell genomics shedding light on marine Thaumarchaeota diversification
    Haiwei Luo
    Department of Marine Sciences, University of Georgia, Athens, GA, USA
    ISME J 8:732-6. 2014
    ....
  14. pmc Ongoing purifying selection on intergenic spacers in group A streptococcus
    Haiwei Luo
    Department of Biological Sciences, University of South Carolina, Columbia, 700 Sumter St, SC 29208, USA
    Infect Genet Evol 11:343-8. 2011
    ....