Jonathan Livny

Summary

Publications

  1. ncbi Mining regulatory 5'UTRs from cDNA deep sequencing datasets
    Jonathan Livny
    The Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA
    Nucleic Acids Res 38:1504-14. 2010
  2. ncbi How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
    Brian J Haas
    Genome Sequencing and Analysis Program, The Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
    BMC Genomics 13:734. 2012
  3. ncbi Bioinformatic discovery of bacterial regulatory RNAs using SIPHT
    Jonathan Livny
    The Broad Institute of MIT and Harvard, Cambridge, MA, USA
    Methods Mol Biol 905:3-14. 2012
  4. ncbi Identification of small RNAs in Francisella tularensis
    Guillaume Postic
    INSERM U1002, Paris, France
    BMC Genomics 11:625. 2010

Collaborators

Detail Information

Publications4

  1. ncbi Mining regulatory 5'UTRs from cDNA deep sequencing datasets
    Jonathan Livny
    The Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA
    Nucleic Acids Res 38:1504-14. 2010
    ..Our findings suggest that the number and diversity of pathways regulated by r5'UTRs has been underestimated and that deep sequencing-based transcriptomics will be extremely valuable in the search for novel r5'UTRs...
  2. ncbi How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
    Brian J Haas
    Genome Sequencing and Analysis Program, The Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA
    BMC Genomics 13:734. 2012
    ..abstract:..
  3. ncbi Bioinformatic discovery of bacterial regulatory RNAs using SIPHT
    Jonathan Livny
    The Broad Institute of MIT and Harvard, Cambridge, MA, USA
    Methods Mol Biol 905:3-14. 2012
    ..Each locus is then annotated for numerous features that provide clues about its potential function and/or enable the most reliable candidates to be identified...
  4. ncbi Identification of small RNAs in Francisella tularensis
    Guillaume Postic
    INSERM U1002, Paris, France
    BMC Genomics 11:625. 2010
    ..Relatively little is known about the regulatory networks existing in this organism that allows it to survive in a wide array of environments and no sRNA regulators have been identified so far...