Alan R Lemmon

Summary

Publications

  1. pmc The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)
    Darin R Rokyta
    Department of Biological Science, Florida State University, Tallahassee, FL 32306 4295, USA
    BMC Genomics 13:312. 2012
  2. ncbi The importance of proper model assumption in bayesian phylogenetics
    Alan R Lemmon
    Section of Integrative Biology, University of Texas, 1 University Station C0930, Austin, Texas 78712, USA
    Syst Biol 53:265-77. 2004
  3. doi The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference
    Alan R Lemmon
    Section of Integrative Biology, University of Texas at Austin, 1 University Station C0930, Austin, TX 78712, USA
    Syst Biol 58:130-45. 2009
  4. doi A likelihood framework for estimating phylogeographic history on a continuous landscape
    Alan R Lemmon
    Section of Integrative Biology, University of Texas Austin, Austin, Texas 78712, USA
    Syst Biol 57:544-61. 2008
  5. doi When trees grow too long: investigating the causes of highly inaccurate bayesian branch-length estimates
    Jeremy M Brown
    Section of Integrative Biology and Center for Computational Biology and Bioinformatics, University of Texas at Austin, 1 University Station C0930, Austin, TX 78712, USA
    Syst Biol 59:145-61. 2010
  6. ncbi Phylogeny-based delimitation of species boundaries and contact zones in the trilling chorus frogs (Pseudacris)
    Emily Moriarty Lemmon
    Section of Integrative Biology, The University of Texas, 1 University Station C0930, Austin, TX 78712, USA
    Mol Phylogenet Evol 44:1068-82. 2007
  7. ncbi Geological and climatic forces driving speciation in the continentally distributed trilling chorus frogs (Pseudacris)
    Emily Moriarty Lemmon
    Section of Integrative Biology, University of Texas at Austin, Austin, Texas 78712, USA
    Evolution 61:2086-103. 2007
  8. ncbi The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics
    Jeremy M Brown
    Section of Integrative Biology, The University of Texas Austin, 1 University Station C0930, Austin, TX 78712, USA
    Syst Biol 56:643-55. 2007
  9. pmc Reinforcement and the genetics of hybrid incompatibilities
    Alan R Lemmon
    Section of Integrative Biology, University of Texas, Austin, Texas 78712, USA
    Genetics 173:1145-55. 2006
  10. pmc The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimation
    Alan R Lemmon
    Laboratory of Evolutionary Genetics, Free University of Brussels ULB, cp 300, Institute of Molecular Biology and Medicine, rue Jeener and Brachet 12, B 6041 Gosselies, Belgium
    Proc Natl Acad Sci U S A 99:10516-21. 2002

Detail Information

Publications10

  1. pmc The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)
    Darin R Rokyta
    Department of Biological Science, Florida State University, Tallahassee, FL 32306 4295, USA
    BMC Genomics 13:312. 2012
    ....
  2. ncbi The importance of proper model assumption in bayesian phylogenetics
    Alan R Lemmon
    Section of Integrative Biology, University of Texas, 1 University Station C0930, Austin, Texas 78712, USA
    Syst Biol 53:265-77. 2004
    ..We caution researchers to assure that the most appropriate model is assumed by employing both a priori model choice methods and a posteriori model adequacy tests...
  3. doi The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference
    Alan R Lemmon
    Section of Integrative Biology, University of Texas at Austin, 1 University Station C0930, Austin, TX 78712, USA
    Syst Biol 58:130-45. 2009
    ....
  4. doi A likelihood framework for estimating phylogeographic history on a continuous landscape
    Alan R Lemmon
    Section of Integrative Biology, University of Texas Austin, Austin, Texas 78712, USA
    Syst Biol 57:544-61. 2008
    ....
  5. doi When trees grow too long: investigating the causes of highly inaccurate bayesian branch-length estimates
    Jeremy M Brown
    Section of Integrative Biology and Center for Computational Biology and Bioinformatics, University of Texas at Austin, 1 University Station C0930, Austin, TX 78712, USA
    Syst Biol 59:145-61. 2010
    ..In any phylogenetic analysis, the biological plausibility of branch-length output must be carefully considered...
  6. ncbi Phylogeny-based delimitation of species boundaries and contact zones in the trilling chorus frogs (Pseudacris)
    Emily Moriarty Lemmon
    Section of Integrative Biology, The University of Texas, 1 University Station C0930, Austin, TX 78712, USA
    Mol Phylogenet Evol 44:1068-82. 2007
    ..kalmi as a distinct species. Results of this study provide both a firm phylogenetic basis for future studies of speciation in the trilling Pseudacris and a taxonomic framework for conservation efforts...
  7. ncbi Geological and climatic forces driving speciation in the continentally distributed trilling chorus frogs (Pseudacris)
    Emily Moriarty Lemmon
    Section of Integrative Biology, University of Texas at Austin, Austin, Texas 78712, USA
    Evolution 61:2086-103. 2007
    ..Finally, we demonstrate that populations in areas affected by Quaternary glaciation and aridification have reduced levels of genetic variation compared to those from more equable regions, suggesting recent colonization...
  8. ncbi The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics
    Jeremy M Brown
    Section of Integrative Biology, The University of Texas Austin, 1 University Station C0930, Austin, TX 78712, USA
    Syst Biol 56:643-55. 2007
    ..We conclude by discussing other approaches for partitioning data, as well as other applications of Bayes factors...
  9. pmc Reinforcement and the genetics of hybrid incompatibilities
    Alan R Lemmon
    Section of Integrative Biology, University of Texas, Austin, Texas 78712, USA
    Genetics 173:1145-55. 2006
    ..Our simulations also show that incompatibilities that evolve in allopatry by drift or weak selection are likely to be lost by swamping during secondary contact, even when selection against hybrids is strong...
  10. pmc The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimation
    Alan R Lemmon
    Laboratory of Evolutionary Genetics, Free University of Brussels ULB, cp 300, Institute of Molecular Biology and Medicine, rue Jeener and Brachet 12, B 6041 Gosselies, Belgium
    Proc Natl Acad Sci U S A 99:10516-21. 2002
    ..Branch support values produced by the metapopulation genetic algorithm might closely approximate the posterior probabilities of the corresponding branches...