Kyoungmi Kim

Summary

Affiliation: American University of Beirut
Country: Lebanon

Publications

  1. pmc A proposed metric for assessing the measurement quality of individual microarrays
    Kyoungmi Kim
    Department of Biostatistics, University of Alabama, Birmingham, Alabama, USA
    BMC Bioinformatics 7:35. 2006
  2. pmc Sources of variation in Affymetrix microarray experiments
    Stanislav O Zakharkin
    University of Alabama, Birmingham, Alabama, USA
    BMC Bioinformatics 6:214. 2005
  3. ncbi request reprint Optimal allocation of replicates for measurement evaluation studies
    Stanislav O Zakharkin
    Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 0022, USA
    Genomics Proteomics Bioinformatics 4:196-202. 2006
  4. ncbi request reprint Microarray analysis
    Grier P Page
    Department of Biostatistics, University of Alabama at Birmingham, Hoover, AL, USA
    Methods Mol Biol 404:409-30. 2007
  5. ncbi request reprint Bayesian analyses of multiple epistatic QTL models for body weight and body composition in mice
    Nengjun Yi
    Department of Biostatistics, Section on Statistical Genetics, University of Alabama, Birmingham, AL 35294, USA
    Genet Res 87:45-60. 2006
  6. pmc HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data
    Prinal Trivedi
    Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
    BMC Bioinformatics 6:86. 2005
  7. pmc Characterization of epistasis influencing complex spontaneous obesity in the BSB model
    Nengjun Yi
    Department of Biostatistics, Section on Statistical Genetics, University of Alabama, Birmingham, Alabama 35294, USA
    Genetics 167:399-409. 2004
  8. ncbi request reprint Identification of positional candidate genes for body weight and adiposity in subcongenic mice
    Sally Chiu
    Rowe Program in Genetics, University of California, Davis, California 95616, USA
    Physiol Genomics 31:75-85. 2007
  9. pmc alpha- and gamma-Tocopherol prevent age-related transcriptional alterations in the heart and brain of mice
    Sang Kyu Park
    Department of Genetics and Medical Genetics, University of Wisconsin, Madison, WI 53706, USA
    J Nutr 138:1010-8. 2008

Detail Information

Publications9

  1. pmc A proposed metric for assessing the measurement quality of individual microarrays
    Kyoungmi Kim
    Department of Biostatistics, University of Alabama, Birmingham, Alabama, USA
    BMC Bioinformatics 7:35. 2006
    ..In some cases this may be manifested as systematic spatial variation on the surface of microarray in which expression measurements within an individual array may vary as a function of geographic position on the array surface...
  2. pmc Sources of variation in Affymetrix microarray experiments
    Stanislav O Zakharkin
    University of Alabama, Birmingham, Alabama, USA
    BMC Bioinformatics 6:214. 2005
    ..The objectives of this study were: (1) to estimate relative magnitudes of different sources of variation and (2) to evaluate agreement between biological and technical replicates...
  3. ncbi request reprint Optimal allocation of replicates for measurement evaluation studies
    Stanislav O Zakharkin
    Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 0022, USA
    Genomics Proteomics Bioinformatics 4:196-202. 2006
    ..Therefore, it is recommended to use two technical replicates for each biological replicate if the goal is to evaluate the reproducibility of measurements...
  4. ncbi request reprint Microarray analysis
    Grier P Page
    Department of Biostatistics, University of Alabama at Birmingham, Hoover, AL, USA
    Methods Mol Biol 404:409-30. 2007
    ..These steps include a clearly stated biological question, experimental design, careful experimental conduct, complete statistical analysis, validation/verification of results, and dissemination of the data...
  5. ncbi request reprint Bayesian analyses of multiple epistatic QTL models for body weight and body composition in mice
    Nengjun Yi
    Department of Biostatistics, Section on Statistical Genetics, University of Alabama, Birmingham, AL 35294, USA
    Genet Res 87:45-60. 2006
    ..Several main and epistatic effects were shared by the body composition and body weight traits, suggesting that pleiotropy plays an important role in growth and obesity...
  6. pmc HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data
    Prinal Trivedi
    Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
    BMC Bioinformatics 6:86. 2005
    ..HDBStat! provides statisticians and biologists a flexible and easy-to-use interface to analyze complex microarray data using a variety of methods for data preprocessing, quality control analysis and hypothesis testing...
  7. pmc Characterization of epistasis influencing complex spontaneous obesity in the BSB model
    Nengjun Yi
    Department of Biostatistics, Section on Statistical Genetics, University of Alabama, Birmingham, Alabama 35294, USA
    Genetics 167:399-409. 2004
    ..Chromosomes 6 and 12 have not only main effects but also strong epistatic effects on plasma total cholesterol. Our results emphasize the importance of modeling epistasis for discovery of obesity genes...
  8. ncbi request reprint Identification of positional candidate genes for body weight and adiposity in subcongenic mice
    Sally Chiu
    Rowe Program in Genetics, University of California, Davis, California 95616, USA
    Physiol Genomics 31:75-85. 2007
    ..Using subcongenic mapping, we successfully narrowed a body weight and obesity QTL interval and identified PC2 as a positional candidate gene...
  9. pmc alpha- and gamma-Tocopherol prevent age-related transcriptional alterations in the heart and brain of mice
    Sang Kyu Park
    Department of Genetics and Medical Genetics, University of Wisconsin, Madison, WI 53706, USA
    J Nutr 138:1010-8. 2008
    ..These results demonstrate that middle age-onset dietary supplementation with alphaT and gammaT can partially prevent age-associated transcriptional changes and that these effects are tissue and tocopherol specific...