Julia Krushkal

Summary

Publications

  1. doi Genome diversity of the TetR family of transcriptional regulators in a metal-reducing bacterial family Geobacteraceae and other microbial species
    Julia Krushkal
    Department of Preventive Medicine, The University of Tennessee Health Science Center, Memphis, USA
    OMICS 15:495-506. 2011
  2. doi Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens
    Julia Krushkal
    Department of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN 38163, USA
    Gene 469:31-44. 2010
  3. ncbi Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant
    Julia Krushkal
    Department of Preventive Medicine, University of Tennessee Health Science Center, 66 N Pauline, Memphis, TN 38163, USA
    Funct Integr Genomics 7:229-55. 2007
  4. ncbi Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information
    Bin Yan
    Department of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN, 38163, USA
    Gene 384:73-95. 2006
  5. ncbi Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens
    Bin Yan
    Department of Preventive Medicine, University of Tennessee Health Science Center, 66 N Pauline St, Ste 633, Memphis, TN 38163, USA
    Biosystems 90:421-41. 2007
  6. pmc Racial differences in gene-specific DNA methylation levels are present at birth
    Ronald M Adkins
    University of Tennessee Health Science Center, Memphis, TN 48103, USA
    Birth Defects Res A Clin Mol Teratol 91:728-36. 2011
  7. doi GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens
    Yanhua Qu
    Department of Preventive Medicine, The University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA
    OMICS 13:439-49. 2009
  8. pmc Association of maternally inherited GNAS alleles with African-American male birth weight
    Ronald M Adkins
    Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38103, USA
    Int J Pediatr Obes 5:177-84. 2010
  9. doi Newborn umbilical cord blood DNA methylation and gene expression levels exhibit limited association with birth weight
    Ronald M Adkins
    Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38103, USA
    Chem Biodivers 9:888-99. 2012
  10. doi Diversity of promoter elements in a Geobacter sulfurreducens mutant adapted to disruption in electron transfer
    Julia Krushkal
    Department of Preventive Medicine, University of Tennessee Health Science Center, 66 N Pauline Ste 633, Memphis, TN 38163, USA
    Funct Integr Genomics 9:15-25. 2009

Detail Information

Publications19

  1. doi Genome diversity of the TetR family of transcriptional regulators in a metal-reducing bacterial family Geobacteraceae and other microbial species
    Julia Krushkal
    Department of Preventive Medicine, The University of Tennessee Health Science Center, Memphis, USA
    OMICS 15:495-506. 2011
    ..In order to understand the role of the TetR regulatory family in Geobacteraceae, we have inferred phylogenetic relationships among the Geobacteraceae TetR proteins and their homologs in other microbial species...
  2. doi Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens
    Julia Krushkal
    Department of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN 38163, USA
    Gene 469:31-44. 2010
    ..sulfurreducens PilR in regulation of production and assembly of pili and flagella...
  3. ncbi Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant
    Julia Krushkal
    Department of Preventive Medicine, University of Tennessee Health Science Center, 66 N Pauline, Memphis, TN 38163, USA
    Funct Integr Genomics 7:229-55. 2007
    ..These findings suggest that Fur- and RpoS-dependent gene expression in G. sulfurreducens is affected by Rel(Gsu)-mediated signaling...
  4. ncbi Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information
    Bin Yan
    Department of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN, 38163, USA
    Gene 384:73-95. 2006
    ....
  5. ncbi Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens
    Bin Yan
    Department of Preventive Medicine, University of Tennessee Health Science Center, 66 N Pauline St, Ste 633, Memphis, TN 38163, USA
    Biosystems 90:421-41. 2007
    ..The closest homolog of E. coli RpoE in G. sulfurreducens may be more similar to FecI than to RpoE. These findings represent the first step in the understanding of the regulatory relationships in G. sulfurreducens on the genome scale...
  6. pmc Racial differences in gene-specific DNA methylation levels are present at birth
    Ronald M Adkins
    University of Tennessee Health Science Center, Memphis, TN 48103, USA
    Birth Defects Res A Clin Mol Teratol 91:728-36. 2011
    ..The origin of these differences is inadequately understood, and this is a question of specific relevance to childhood and adult cancer...
  7. doi GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens
    Yanhua Qu
    Department of Preventive Medicine, The University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA
    OMICS 13:439-49. 2009
    ..sulfurreducens, aiding in investigation of mechanisms that regulate its ability to generate electric power, bioremediate environmental waste, and adapt to environmental changes...
  8. pmc Association of maternally inherited GNAS alleles with African-American male birth weight
    Ronald M Adkins
    Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38103, USA
    Int J Pediatr Obes 5:177-84. 2010
    ..We performed a survey of single nucleotide polymorphisms (SNPs) in 14 candidate genes to identify associations with birth weight variation...
  9. doi Newborn umbilical cord blood DNA methylation and gene expression levels exhibit limited association with birth weight
    Ronald M Adkins
    Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38103, USA
    Chem Biodivers 9:888-99. 2012
    ..However, our discovery of biologically plausible associations in a peripheral tissue suggests that further studies of tissues key to fetal growth regulation are warranted...
  10. doi Diversity of promoter elements in a Geobacter sulfurreducens mutant adapted to disruption in electron transfer
    Julia Krushkal
    Department of Preventive Medicine, University of Tennessee Health Science Center, 66 N Pauline Ste 633, Memphis, TN 38163, USA
    Funct Integr Genomics 9:15-25. 2009
    ....
  11. doi Phylogenetic classification of diverse LysR-type transcriptional regulators of a model prokaryote Geobacter sulfurreducens
    Julia Krushkal
    Department of Preventive Medicine, The University of Tennessee Health Science Center, Memphis, TN 38163, USA
    J Mol Evol 74:187-205. 2012
    ..sulfurreducens LTTRs. This is the first study to date providing a detailed classification of LTTRs in the deltaproteobacterial family Geobacteraceae...
  12. pmc Alpha-adrenergic receptor gene polymorphisms and cardiovascular reactivity to stress in Black adolescents and young adults
    Robert M Kelsey
    Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38104, USA
    Psychophysiology 49:401-12. 2012
    ..Thus, specific associations emerged between genetic variations in α-Ars and cardiovascular reactivity in young Blacks...
  13. ncbi Site -2548 of the leptin gene is associated with gender-specific trends in newborn size and cord leptin levels
    Ronald M Adkins
    Children s Foundation Research Center and Center of Genomics and Bioinformatics, University of Tennessee Health Science Center, Memphis, TN 38122, USA
    Int J Pediatr Obes 2:130-7. 2007
    ..We examined the relationships among leptin gene polymorphisms, size for gestational age, umbilical cord leptin, and gender...
  14. pmc Association of birth weight with polymorphisms in the IGF2, H19, and IGF2R genes
    Ronald M Adkins
    Department of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee 38103, USA
    Pediatr Res 68:429-34. 2010
    ....
  15. ncbi Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae
    Bin Yan
    Department of Preventive Medicine, Center of Genomics and Bioinformatics, University of Tennesee Health Science Center, 66 N Pauline St, Ste 633, Memphis, TN 38163, USA
    J Theor Biol 230:133-44. 2004
    ..These predictions will aid in further elucidation of regulatory networks of gene interactions in Geobacteraceae...
  16. pmc Parental ages and levels of DNA methylation in the newborn are correlated
    Ronald M Adkins
    Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38103, USA
    BMC Med Genet 12:47. 2011
    ..Only a proportion of these increased risks among the children of older parents can be attributed to nondisjunction and chromosomal rearrangements...
  17. doi Beta-adrenergic receptor gene polymorphisms and cardiovascular reactivity to stress in Black adolescents and young adults
    Robert M Kelsey
    Department of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee 38105, USA
    Psychophysiology 47:863-73. 2010
    ..Thus, specific patterns of associations emerged between genetic variations in beta-ARs and cardiovascular reactivity in young Blacks...
  18. ncbi Association between paternally inherited haplotypes upstream of the insulin gene and umbilical cord IGF-II levels
    Ronald M Adkins
    Department of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee 38103, USA
    Pediatr Res 62:451-5. 2007
    ..Analyses of haplotypes inferred from these two SNPs demonstrate a significant relationship between paternally transmitted haplotypes and newborn IGF-II levels, but no association with maternally transmitted haplotypes...
  19. ncbi Computational analysis of the evolution of the structure and function of 1-deoxy-D-xylulose-5-phosphate synthase, a key regulator of the mevalonate-independent pathway in plants
    Julia Krushkal
    Department of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN 38163, USA
    Gene 313:127-38. 2003
    ..To our knowledge this is the first suggestion that DXS is located specifically in the chloroplast thylakoid...