Roger Kouyos

Summary

Publications

  1. doi request reprint Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV
    Roger D Kouyos
    Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland, Department of Infectious Diseases, Bern University Hospital and University of Bern, Bern, Switzerland, Institute of Medical Virology, University of Zurich, Zurich, Switzerland, Laboratory of Virology, University Hospital Geneva, Geneva, Switzerland, Division of Immunology and Allergy, University Hospital Lausanne, University of Lausanne, Lausanne, Switzerland, Department Biomedicine, University of Basel, Basel, Switzerland, Division of Infectious Diseases, Geneva University Hospital, Geneva, Division of Immunology, University Hospital Lausanne, Lausanne, Switzerland, Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Division of Infectious Diseases, Cantonal Hospital St Gallen, St Gallen, Switzerland and Division of Infectious Diseases, Regional Hospital Lugano, Lugano, Switzerland
    Int J Epidemiol 43:887-96. 2014
  2. pmc On the role of resonance in drug failure under HIV treatment interruption
    Leonardo Ona
    Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, Germany
    Theor Biol Med Model 10:44. 2013
  3. pmc Hospital-community interactions foster coexistence between methicillin-resistant strains of Staphylococcus aureus
    Roger Kouyos
    Department of Ecology and Evolutionary Biology, Princeton University, Princeton, New Jersey, United States of America
    PLoS Pathog 9:e1003134. 2013
  4. doi request reprint Estimating the basic reproductive number from viral sequence data
    Tanja Stadler
    Institute of Integrative Biology, Eidgenossische Technische Hochschule ETH Zurich, Zurich, Switzerland
    Mol Biol Evol 29:347-57. 2012
  5. doi request reprint A Novel Acute Retroviral Syndrome Severity Score Predicts the Key Surrogate Markers for HIV-1 Disease Progression
    Dominique L Braun
    Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
    PLoS ONE 9:e114111. 2014
  6. pmc Inferring epidemic contact structure from phylogenetic trees
    Gabriel E Leventhal
    Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
    PLoS Comput Biol 8:e1002413. 2012
  7. doi request reprint Loss to follow-up of HIV-infected women after delivery: The Swiss HIV Cohort Study and the Swiss Mother and Child HIV Cohort Study
    Karoline Aebi-Popp
    Department of Infectious Diseases, University Hospital Bern, Bern, Switzerland
    J Int AIDS Soc 17:19535. 2014
  8. pmc Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1
    Danesh Moradigaravand
    Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, Zurich, Switzerland
    PLoS Genet 10:e1004439. 2014
  9. pmc Cycling empirical antibiotic therapy in hospitals: meta-analysis and models
    Pia Abel Zur Wiesch
    Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland Division of Global Health Equity, Brigham and Women s Hospital Harvard Medical School, Boston, Massachusetts, United States of America
    PLoS Pathog 10:e1004225. 2014

Collaborators

Detail Information

Publications9

  1. doi request reprint Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV
    Roger D Kouyos
    Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland, Department of Infectious Diseases, Bern University Hospital and University of Bern, Bern, Switzerland, Institute of Medical Virology, University of Zurich, Zurich, Switzerland, Laboratory of Virology, University Hospital Geneva, Geneva, Switzerland, Division of Immunology and Allergy, University Hospital Lausanne, University of Lausanne, Lausanne, Switzerland, Department Biomedicine, University of Basel, Basel, Switzerland, Division of Infectious Diseases, Geneva University Hospital, Geneva, Division of Immunology, University Hospital Lausanne, Lausanne, Switzerland, Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Division of Infectious Diseases, Cantonal Hospital St Gallen, St Gallen, Switzerland and Division of Infectious Diseases, Regional Hospital Lugano, Lugano, Switzerland
    Int J Epidemiol 43:887-96. 2014
    ..HCV coinfection remains a major cause of morbidity and mortality among HIV-infected individuals and its incidence has increased dramatically in HIV-infected men who have sex with men(MSM)...
  2. pmc On the role of resonance in drug failure under HIV treatment interruption
    Leonardo Ona
    Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, Germany
    Theor Biol Med Model 10:44. 2013
    ..In the present study we used a mathematical model to analyse the parameters affecting the output of drug treatment interruption and the premises of the resonance hypothesis...
  3. pmc Hospital-community interactions foster coexistence between methicillin-resistant strains of Staphylococcus aureus
    Roger Kouyos
    Department of Ecology and Evolutionary Biology, Princeton University, Princeton, New Jersey, United States of America
    PLoS Pathog 9:e1003134. 2013
    ..Thus, our results indicate that the large heterogeneities existing in human populations make coexistence between hospital- and community-associated strains of MRSA a likely outcome...
  4. doi request reprint Estimating the basic reproductive number from viral sequence data
    Tanja Stadler
    Institute of Integrative Biology, Eidgenossische Technische Hochschule ETH Zurich, Zurich, Switzerland
    Mol Biol Evol 29:347-57. 2012
    ..We apply the method to genetic data of the HIV-1 epidemic in Switzerland...
  5. doi request reprint A Novel Acute Retroviral Syndrome Severity Score Predicts the Key Surrogate Markers for HIV-1 Disease Progression
    Dominique L Braun
    Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Zurich, Switzerland
    PLoS ONE 9:e114111. 2014
    ..A risk-based scoring system associated with surrogate markers of HIV-1 disease progression could be helpful to stratify patients with PHI at highest risk for HIV-1 disease progression...
  6. pmc Inferring epidemic contact structure from phylogenetic trees
    Gabriel E Leventhal
    Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
    PLoS Comput Biol 8:e1002413. 2012
    ..Using a phylogeny from the Swiss HIV epidemic, we show that this epidemic has a significantly more unbalanced tree than would be expected from random mixing...
  7. doi request reprint Loss to follow-up of HIV-infected women after delivery: The Swiss HIV Cohort Study and the Swiss Mother and Child HIV Cohort Study
    Karoline Aebi-Popp
    Department of Infectious Diseases, University Hospital Bern, Bern, Switzerland
    J Int AIDS Soc 17:19535. 2014
    ..After delivery, however, childcare and competing commitments might lead to disengagement from HIV care. The aim of this study was to quantify loss to follow-up (LTFU) from HIV care after delivery and to identify risk factors for LTFU...
  8. pmc Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1
    Danesh Moradigaravand
    Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, Zurich, Switzerland
    PLoS Genet 10:e1004439. 2014
    ..The estimated epistasis in the adapting populations is significantly negative. Our results highlight the importance of recombination in the evolution of HIV-I. ..
  9. pmc Cycling empirical antibiotic therapy in hospitals: meta-analysis and models
    Pia Abel Zur Wiesch
    Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland Division of Global Health Equity, Brigham and Women s Hospital Harvard Medical School, Boston, Massachusetts, United States of America
    PLoS Pathog 10:e1004225. 2014
    ..Our results suggest that "adjustable cycling" suppresses multiple resistance and warrants further investigations that allow comparing various diseases and hospital settings. ..