Research Topics

In Geol Choi

Summary

Affiliation: Korea University
Country: Korea

Publications

  1. Jeong J, Park H, Park B, Mannaa M, Sang M, Choi I, et al. Draft Genome Sequence of a Biocontrol Rhizobacterium, Chryseobacterium kwangjuense Strain KJ1R5, Isolated from Pepper (Capsicum annuum). Genome Announc. 2016;4: pubmed publisher
  2. Jeong J, Park B, Park H, Choi I, Kim K. Draft Genome Sequence of Chryseobacterium sp. Strain GSE06, a Biocontrol Endophytic Bacterium Isolated from Cucumber (Cucumis sativus). Genome Announc. 2016;4: pubmed publisher
    ..Here, we present its draft genome sequence, which contains genes related to biocontrol traits, such as colonization, antimicrobial activity, plant growth promotion, and abiotic or biotic stress adaptation. ..
  3. Park H, Park B, Kim H, Park W, Choi I. Draft Genome Sequences of Two Ureolytic Bacteria Isolated from Concrete Block Waste. Genome Announc. 2016;4: pubmed publisher
    ..We sequenced genomes of two ureolytic bacteria, Bacillus sp. JH7 and Sporosarcina sp. HYO08, which were isolated from concrete waste and have a potential for biocementation applications. ..
  4. Min B, Kim S, Oh Y, Kong W, Park H, Cho H, et al. Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus. BMC Genomics. 2018;19:789 pubmed publisher
    ..Comparative genome analysis revealed the conserved gene cluster for terpenoid biosynthesis in the genome. These discoveries will further our understanding of the biosynthesis of medicinal bioactive molecules in this edible mushroom. ..
  5. Min B, Park H, Jang Y, Kim J, Kim K, Pangilinan J, et al. Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation. J Biotechnol. 2015;211:42-3 pubmed publisher
    ..We identified 17 lignin-modifying peroxidases and other 377 carbohydrate-active enzymes for modeling lignocellulose deconstruction and mycoremediation. ..
  6. Lee S, Park E, Ko H, Bang W, Kim H, Kim K, et al. Crystal structure analysis of a bacterial aryl acylamidase belonging to the amidase signature enzyme family. Biochem Biophys Res Commun. 2015;467:268-74 pubmed publisher
    ..The optimum activity of AAA at pH > 10 suggests that the reaction mechanism employs Lys(84) as the catalytic base to polarize the Ser(187) nucleophile in the catalytic triad. ..
  7. Ko J, Ko H, Kim K, Choi I. Characterization of the biochemical properties of recombinant Xyn10C from a marine bacterium, Saccharophagus degradans 2-40. Bioprocess Biosyst Eng. 2016;39:677-84 pubmed publisher
    ..4 mg mL(-1) and 253 µmol mg(-1) min(-1), respectively. The efficient catalytic function of Xyn10C on short-length xylo-oligosaccharide chains was similar to the typical function of other known GH10 xylanases. ..
  8. Pathiraja D, Kim K, Choi I. Rapid and robust enzymatic sensing and quantitation of 3,6-Anhydro-L-galactose in a heterogeneous sugar mixture. Carbohydr Res. 2017;446-447:13-18 pubmed publisher
    ..We suggest application of the assay for detection and quantitation of L-AHG in commercial products and biosensor development. ..
  9. Lee S, Kim K, Kim H, Choi I. Crystal structure analysis of 3,6-anhydro-l-galactonate cycloisomerase suggests emergence of novel substrate specificity in the enolase superfamily. Biochem Biophys Res Commun. 2017;491:217-222 pubmed publisher
    ..The structural phylogenetic analysis of the enolase superfamily including ACIs revealed sequential, structural, and functional relationships related to the emergence of novel substrate specificity. ..