Yong Hak Kim

Summary

Publications

  1. ncbi request reprint Numerical and genetic analysis of polycyclic aromatic hydrocarbon-degrading mycobacteria
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR 72079, USA
    Microb Ecol 50:110-9. 2005
  2. ncbi request reprint Influence of erythromycin A on the microbial populations in aquaculture sediment microcosms
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR 72079, USA
    Aquat Toxicol 73:230-41. 2005
  3. doi request reprint Decolorization of malachite green by cytochrome c in the mitochondria of the fungus Cunninghamella elegans
    Yong Hak Kim
    Functional Proteomics Center, Korea Institute of Science and Technology, Seongbuk, Seoul 136 791, Republic of Korea
    Arch Biochem Biophys 494:159-65. 2010
  4. ncbi request reprint Physiological, numerical and molecular characterization of alkyl ether-utilizing rhodococci
    Yong Hak Kim
    School of Biological Sciences, Seoul National University, San 56 1 Shinrim, Kwanak, Seoul 151 747, Korea
    Environ Microbiol 9:1497-510. 2007
  5. ncbi request reprint Rhodococcus sp. strain TM1 plays a synergistic role in the degradation of piperidine by Mycobacterium sp. strain THO100
    Yong Hak Kim
    School of Biological Sciences, Seoul National University, San 56 1 Shinrim, Kwanak, Seoul 151 747, Republic of Korea
    Arch Microbiol 186:183-93. 2006
  6. ncbi request reprint Physiological, biochemical, and genetic characterization of an alicyclic amine-degrading Mycobacterium sp. strain THO100 isolated from a morpholine-containing culture of activated sewage sludge
    Yong Hak Kim
    School of Biological Sciences, Seoul National University, San 56 1 Shinrim, Kwanak, Seoul, Republic of Korea
    Arch Microbiol 186:425-34. 2006
  7. ncbi request reprint Mineralization of erythromycin A in aquaculture sediments
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Rd, Jefferson, AR 72079, USA
    FEMS Microbiol Lett 234:169-75. 2004
  8. ncbi request reprint Evidence for the existence of PAH-quinone reductase and catechol-O-methyltransferase in Mycobacterium vanbaalenii PYR-1
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, US FDA, 3900 NCTR Rd, Jefferson, AR, 72079, USA
    J Ind Microbiol Biotechnol 31:507-16. 2004
  9. ncbi request reprint Two polycyclic aromatic hydrocarbon o-quinone reductases from a pyrene-degrading Mycobacterium
    Yong Hak Kim
    National Center for Toxicological Research, U S FDA, 3900 NCTR Rd, Jefferson, AR 72079 9502, USA
    Arch Biochem Biophys 416:209-17. 2003
  10. pmc Molecular cloning, expression and characterization of a novel class glutathione S-transferase from the fungus Cunninghamella elegans
    Chang Jun Cha
    Division of Microbiology, National Center for Toxicological Research, U S Food and Drug Administration, 3900 NCTR Road, Jefferson, AR 72079, U S A
    Biochem J 368:589-95. 2002

Collaborators

Detail Information

Publications26

  1. ncbi request reprint Numerical and genetic analysis of polycyclic aromatic hydrocarbon-degrading mycobacteria
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR 72079, USA
    Microb Ecol 50:110-9. 2005
    ....
  2. ncbi request reprint Influence of erythromycin A on the microbial populations in aquaculture sediment microcosms
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR 72079, USA
    Aquat Toxicol 73:230-41. 2005
    ..Erythromycin A appeared to influence the development and proliferation of strain GD200, possibly via the lateral gene transfer of ereA2...
  3. doi request reprint Decolorization of malachite green by cytochrome c in the mitochondria of the fungus Cunninghamella elegans
    Yong Hak Kim
    Functional Proteomics Center, Korea Institute of Science and Technology, Seongbuk, Seoul 136 791, Republic of Korea
    Arch Biochem Biophys 494:159-65. 2010
    ..The RT-PCR results showed tight regulation of the cecyt gene expression by reactive oxygen species. We suggest that CeCyt acts as a protein reductant for MG under oxidative stress in a stationary or secondary growth stage of this fungus...
  4. ncbi request reprint Physiological, numerical and molecular characterization of alkyl ether-utilizing rhodococci
    Yong Hak Kim
    School of Biological Sciences, Seoul National University, San 56 1 Shinrim, Kwanak, Seoul 151 747, Korea
    Environ Microbiol 9:1497-510. 2007
    ..The substrate availability in the degradation of aryl AEs, cyclic AEs and linear AEs agreed with the molecular probing of the respective genes encoding cytochrome P450RR1, ThmA and PrmA...
  5. ncbi request reprint Rhodococcus sp. strain TM1 plays a synergistic role in the degradation of piperidine by Mycobacterium sp. strain THO100
    Yong Hak Kim
    School of Biological Sciences, Seoul National University, San 56 1 Shinrim, Kwanak, Seoul 151 747, Republic of Korea
    Arch Microbiol 186:183-93. 2006
    ..This study suggested that strain TM1 possessing Gad1 played a synergistic role in reducing the toxic and inhibitory effects of GA produced in the degradation of piperidine by strain THO100...
  6. ncbi request reprint Physiological, biochemical, and genetic characterization of an alicyclic amine-degrading Mycobacterium sp. strain THO100 isolated from a morpholine-containing culture of activated sewage sludge
    Yong Hak Kim
    School of Biological Sciences, Seoul National University, San 56 1 Shinrim, Kwanak, Seoul, Republic of Korea
    Arch Microbiol 186:425-34. 2006
    ..In addition, we found a spontaneous deletion of P450(mor) from another strain HE5 containing the archetypal mor gene cluster, which indicated a possible occurrence of DNA recombination to rearrange the DNA...
  7. ncbi request reprint Mineralization of erythromycin A in aquaculture sediments
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Rd, Jefferson, AR 72079, USA
    FEMS Microbiol Lett 234:169-75. 2004
    ..This study suggests that erythromycin A is partially or completely mineralized by the sediment microbial populations...
  8. ncbi request reprint Evidence for the existence of PAH-quinone reductase and catechol-O-methyltransferase in Mycobacterium vanbaalenii PYR-1
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, US FDA, 3900 NCTR Rd, Jefferson, AR, 72079, USA
    J Ind Microbiol Biotechnol 31:507-16. 2004
    ..06+/-0.04 nmol/30 min(-1) mg-protein(-1)). These results suggest that the PQR and COMT activities of M. vanbaalenii PYR-1 may play an important role in the detoxification of PAH catechols...
  9. ncbi request reprint Two polycyclic aromatic hydrocarbon o-quinone reductases from a pyrene-degrading Mycobacterium
    Yong Hak Kim
    National Center for Toxicological Research, U S FDA, 3900 NCTR Rd, Jefferson, AR 72079 9502, USA
    Arch Biochem Biophys 416:209-17. 2003
    ..80) and PQ (5.19) than PQR2 (13.9 for menadione and 176 for PQ). Additionally, PQR2 exhibited a broad substrate specificity with high specificity constants for 1,4-naphthalenequinone, 1,2-naphthalenequinone, and PyQ...
  10. pmc Molecular cloning, expression and characterization of a novel class glutathione S-transferase from the fungus Cunninghamella elegans
    Chang Jun Cha
    Division of Microbiology, National Center for Toxicological Research, U S Food and Drug Administration, 3900 NCTR Road, Jefferson, AR 72079, U S A
    Biochem J 368:589-95. 2002
    ..Mutagenesis analysis revealed that Tyr(10) in the N-terminal region is essential for catalysis of CeGST1-1. We propose from these results that the CeGSTs are novel Gamma-class GSTs and designated as GSTG1-1 and GSTG2-2 respectively...
  11. doi request reprint Degradation of various alkyl ethers by alkyl ether-degrading Actinobacteria isolated from activated sludge of a mixed wastewater treatment
    Yong Hak Kim
    School of Biological Sciences, Seoul National University, San 56 1 Shinrim, Kwanak, Seoul 151 747, Republic of Korea
    Chemosphere 73:1442-7. 2008
    ..6 vs. 0.6). This study suggests that the AE-degrading Actinobacteria can orchestrate various substrate specificity responses to the degradation of various categories of AE pollutants in activated sludge communities...
  12. ncbi request reprint A kinetic study on the degradation of erythromycin A in aqueous solution
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, U S Food and Drug Administration, 3900 NCTR Rd, Jefferson, AR 72079, USA
    Int J Pharm 271:63-76. 2004
    ..0-10.0...
  13. ncbi request reprint Effects of pH on the degradation of phenanthrene and pyrene by Mycobacterium vanbaalenii PYR-1
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, United States Food and Drug Administration, 3900 NCTR Rd, Jefferson, AR 72079, USA
    Appl Microbiol Biotechnol 67:275-85. 2005
    ..The non-K-region polycyclic aromatic hydrocarbon oxidation might be a significant burden to the cell due to the accumulation of toxic metabolites...
  14. pmc Antibiotic stress-induced modulation of the endoribonucleolytic activity of RNase III and RNase G confers resistance to aminoglycoside antibiotics in Escherichia coli
    Wooseok Song
    Department of Life Science, Chung Ang University, Seoul 156 756, Republic of Korea, Marine Biotechnology Research Division, Korea Institute of Ocean Science and Technology, Ansan 426 744, Republic of Korea, Department of Microbiology, Catholic University of Daegu, School of Medicine, Nam Gu, Daegu 705 718, Republic of Korea, Department of Chemistry, KAIST, Daejeon 305 701, Republic of Korea, Department of Pharmacy, Chung Ang University, Seoul 156 756, Republic of Korea and Department of Microbiology, Pusan National University, Busan 609 735, Republic of Korea
    Nucleic Acids Res 42:4669-81. 2014
    ..coli and related gram-negative bacteria to aminoglycoside antibiotics. ..
  15. ncbi request reprint Adsorption and clay-catalyzed degradation of erythromycin A on homoionic clays
    Yong Hak Kim
    Div of Microbiology, National Center for Toxicological Research, U S Food and Drug Admin, Jefferson, AR 72079, USA
    J Environ Qual 33:257-64. 2004
    ..In addition, the Fe3+-exchanged clay minerals seemed to have an electrostatic interaction with the erythromycin A molecule, by which the hydrolysis of the neutral sugar was influenced...
  16. doi request reprint A proteomic approach based on multiple parallel separation for the unambiguous identification of an antibody cognate antigen
    Joohee Mun
    Functional Proteomics Center, Korea Institute of Science and Technology, Seongbuk, Seoul, Republic of Korea
    Electrophoresis 31:3428-36. 2010
    ..Therefore, MPS could be used for the characterization of diagnostic antibodies raised in laboratory animals as well as autoantibodies isolated from diseased patients...
  17. ncbi request reprint Voltammetric investigation of macrolides by an HPLC-coulometric assay
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, U S Food and Drug Administration, 3900 NCTR Road, Jefferson, AR 72079, USA
    J Pharm Biomed Anal 38:390-6. 2005
    ..1 microg ml(-1)). The assay shows interferences from biomatrices in rat's blood plasma and serum, and human urine, but they were effectively removed by a cold acetonitrile extraction method...
  18. doi request reprint Proteomic analysis of breast cancer tissue reveals upregulation of actin-remodeling proteins and its relevance to cancer invasiveness
    Dong Hyun Kim
    Functional Proteomics Center, Korea Institute of Science and Technology, Seoul, Korea
    Proteomics Clin Appl 3:30-40. 2009
    ..Taken together, the cellular levels of p34-Arc and coronin-1A were linked to cancer development and migration. The data obtained from the present study provides new insight into the management of breast cancer...
  19. ncbi request reprint Purification and characterization of an erythromycin esterase from an erythromycin-resistant Pseudomonas sp
    Yong Hak Kim
    Division of Microbiology, National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Rd, Jefferson, AR 72079, USA
    FEMS Microbiol Lett 210:239-44. 2002
    ..0-9.0. The half-life of the enzyme was estimated to be 8.9 h at 35 degrees C and 0.23 h at 55 degrees C, and the activation energy of the catalytic reaction of erythromycin A was estimated at 16.2 kJ mol(-1)...
  20. pmc Differential profiling of breast cancer plasma proteome by isotope-coded affinity tagging method reveals biotinidase as a breast cancer biomarker
    Un Beom Kang
    Life Sciences Division, Korea Institute of Science and Technology, Seoul 136 791, Korea
    BMC Cancer 10:114. 2010
    ..It is important to discover a reliable biomarker for the detection of breast cancer. Plasma is the most ideal source for cancer biomarker discovery since many cells cross-communicate through the secretion of soluble proteins into blood...
  21. doi request reprint A previously uncultured, paper mill Propionibacterium is able to degrade O-aryl alkyl ethers and various aromatic hydrocarbons
    Nithyananda Thorenoor
    Life Sciences Division, Korea Institute of Science and Technology, Seongbuk, Seoul 136 791, Republic of Korea
    Chemosphere 75:1287-93. 2009
    ..Our results demonstrate that strain MOB600 may play a major role in the degradation of lignin-like O-aryl alkyl ethers and various aromatic hydrocarbon pollutants in activated sludge of paper mill effluent...
  22. doi request reprint Localization of the death effector domain of Fas-associated death domain protein into the membrane of Escherichia coli induces reactive oxygen species-involved cell death
    Nithyananda Thorenoor
    Life Sciences Division, Korea Institute of Science and Technology, 39 1 Hawolgok, Seongbuk, Seoul 136 791, Korea
    Biochemistry 49:1435-47. 2010
    ..Our results provide a common mechanistic feature of ROS-involved cell death throughout prokaryotes and eukaryotes...
  23. pmc Upregulation of RNase E activity by mutation of a site that uncompetitively interferes with RNA binding
    Hayoung Go
    School of Biological Sciences, Chung Ang University, Seoul, Republic of Korea
    RNA Biol 8:1022-34. 2011
    ..Our results identify a novel RNase E locus that disparately affects the number of substrate binding sites and catalytic activity of the enzyme. We propose a model that may account for these surprising effects...
  24. ncbi request reprint Inhibition of diethyl ether degradation in Rhodococcus sp. strain DEE5151 by glutaraldehyde and ethyl vinyl ether
    Yong Hak Kim
    Institut für Siedlungswasserbau, Wassergüte und Abfallwirtschaft, Universitat Stuttgart, Abteilung Biologische Abluftreinigung, Bandtäle 2, D 70569 Stuttgart Büsnau, Germany
    FEMS Microbiol Lett 243:317-22. 2005
    ..The mixed type inhibition by ethyl vinyl ether seemed to be introduced not only by the structure similarity with diethyl ether, but also by the reactivity of the vinyl ether with cellular components in the whole cell system...
  25. pmc Degradation of alkyl ethers, aralkyl ethers, and dibenzyl ether by Rhodococcus sp. strain DEE5151, isolated from diethyl ether-containing enrichment cultures
    Yong Hak Kim
    Institut für Siedlungswasserbau, Wassergüte und Abfallwirtschaft, Universitat Stuttgart, Abteilung Biologische Abluftreinigung, Bandtäle 2, D 70569 Stuttgart Büsnau, Germany
    Appl Environ Microbiol 70:4398-401. 2004
    ..Phenetole seems to be subject also to another ether-cleaving enzyme. Other strains of this group showed different enzymatic activities towards the substrate classes investigated...
  26. ncbi request reprint Optimization of biological phosphorus removal from contaminated sediments with phosphate-solubilizing microorganisms
    Yong Hak Kim
    Department of Civil Engineering, Yonsei University, 134 Sinchon, Seodaemun, Seoul 120 749, Korea
    J Biosci Bioeng 99:23-9. 2005
    ..The PSM species, MB 14, grown under these conditions was applied to treat contaminated dredged sediments in a bioslurry reactor. In 9 d, MB 14 solubilized 34.5% of total phosphorus in the contaminated dredged sediments...