Research Topics
Genomes and Genes | D James NokesSummaryAffiliation: Kenya Medical Research Institute Country: Kenya Publications
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Detail Information
Publications
Respiratory syncytial virus epidemiology in a birth cohort from Kilifi district, Kenya: infection during the first year of lifeD James Nokes
Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Kilifi, Kenya
J Infect Dis 190:1828-32. 2004..RSV contributed significantly to total LRTI disease in this vaccine-target group...
Respiratory syncytial virus infection and disease in infants and young children observed from birth in Kilifi District, KenyaD James Nokes
Kenya Medical Research Institute, Centre for Geographic Medicine Research Coast, Kilifi, Kenya
Clin Infect Dis 46:50-7. 2008..In developing countries, there are few data that characterize the disease burden attributable to respiratory syncytial virus (RSV) and clearly define which age group to target for vaccine intervention...
Incidence and severity of respiratory syncytial virus pneumonia in rural Kenyan children identified through hospital surveillanceD James Nokes
Kenya Medical Research Institute, Centre for Geographic Medicine Research Coast, Kilifi, Kenya
Clin Infect Dis 49:1341-9. 2009..Although necessary for developing a rationale for vaccination, the burden of severe respiratory syncytial virus (RSV) disease in children in resource-poor settings remains poorly defined...
Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural kenyaCharles N Agoti
Kenya Medical Research Institute, Centre for Geographic Medicine Research, Coast, Kenya
J Infect Dis 206:1532-41. 2012..The extent to which this is a consequence of immune memory of infection history or prevalent diversity remains unclear...
Sensitivity of hospital-based surveillance for severe disease: a geographic information system analysis of access to care in Kilifi district, KenyaJennifer C Moïsi
KEMRI Wellcome Trust Research Programme, Kilifi, Kenya
Bull World Health Organ 89:102-11. 2011..To explore the relationship between homestead distance to hospital and access to care and to estimate the sensitivity of hospital-based surveillance in Kilifi district, Kenya...
The level and duration of RSV-specific maternal IgG in infants in Kilifi KenyaRachel Ochola
Kenya Medical Research Institute, Centre for Geographic Medicine Research Coast, Kilifi, Kenya
PLoS ONE 4:e8088. 2009..The rate of decay of RSV-specific maternal antibodies (RSV-matAb), the factors affecting cord blood levels, and the relationship between these levels and protection from infection are poorly defined...
Duration of shedding of respiratory syncytial virus in a community study of Kenyan childrenEmelda A Okiro
Malaria Public Health and Epidemiology Group, Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Nairobi, Kenya
BMC Infect Dis 10:15. 2010..Our understanding of the transmission dynamics of respiratory syncytial virus (RSV) infection will be better informed with improved data on the patterns of shedding in cases not limited only to hospital admissions...
Viral etiology of severe pneumonia among Kenyan infants and childrenJames A Berkley
Kenya Medical Research Institute, Centre for Geographic Medicine Research Coast, Kilifi, Kenya
JAMA 303:2051-7. 2010..Pneumonia is the leading cause of childhood death in sub-Saharan Africa. Comparative estimates of the contribution of causative pathogens to the burden of disease are essential for targeted vaccine development...
Improved detection of respiratory viruses in pediatric outpatients with acute respiratory illness by real-time PCR using nasopharyngeal flocked swabsPatrick Kiio Munywoki
KEMRI Wellcome Trust Research Programme, Kilifi, Kenya
J Clin Microbiol 49:3365-7. 2011..6% versus 79.2%; P = 0.0043). NFS collection was noninferior to NW collection in the detection of RSV by IF...
Rotavirus genetic diversity, disease association, and temporal change in hospitalized rural Kenyan childrenD James Nokes
Kenya Medical Research Institute, Centre for Geographic Medicine Research Coast, Kilifi, Kenya
J Infect Dis 202:S180-6. 2010..Longitudinal surveillance of disease-causing strains is a prerequisite to intervention...
Identifying infections with respiratory syncytial virus by using specific immunoglobulin G (IgG) and IgA enzyme-linked immunosorbent assays with oral-fluid samplesEmelda A Okiro
Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute Wellcome Trust Research Programme, Kilifi, Kenya
J Clin Microbiol 46:1659-62. 2008..Our data show significant promise for the use of oral fluid alone in RSV infection surveillance. The observed rapid dynamics of the antibody responses are informative in defining study sampling intervals...
Intrapatient variation of the respiratory syncytial virus attachment protein geneCharles N Agoti
Kenya Medical Research Institute, Centre for Geographic Medicine Research Coast, Kilifi, Kenya
J Virol 84:10425-8. 2010..Of particular note, the deletion of the exact portion of the gene which had been duplicated in some isolates was observed in viral RNAs from two patients...
Added value of an oropharyngeal swab in detection of viruses in children hospitalized with lower respiratory tract infectionLaura L Hammitt
KEMRI Wellcome Trust Research Programme, Kilifi, Kenya
J Clin Microbiol 49:2318-20. 2011..Oropharyngeal swabs increased the number of viral infections detected by 15%, compared to collection of a nasopharyngeal swab alone. This advantage was most pronounced for detection of influenza, parainfluenza, and adenovirus...
Treatment failure among Kenyan children with severe pneumonia--a cohort studyClare Webb
Kenya Medical Research Institute KEMRI, Centre for Geographic Medicine Research, Kilifi, Kenya
Pediatr Infect Dis J 31:e152-7. 2012..Pneumonia is the leading cause of childhood mortality worldwide. The World Health Organization recommends presumptive treatment based on clinical syndromes. Recent studies raise concerns over the frequency of treatment failure in Africa...
Group- and genotype-specific neutralizing antibody responses against respiratory syncytial virus in infants and young children with severe pneumoniaCharles J Sande
KEMRI Wellcome Trust Research Programme, Kilifi, Kenya
J Infect Dis 207:489-92. 2013..4) or BA virus (50% vs 65%; P = .4). The RSV neutralizing response is group specific. The BA-associated genetic change did not confer an ability to escape neutralizing responses to previous non-BA viruses...
Emergency triage assessment for hypoxaemia in neonates and young children in a Kenyan hospital: an observational studyMichael K Mwaniki
Centre for Geographic Medicine Research, Kenya Medical Research Institute, Kilifi, Kenya
Bull World Health Organ 87:263-70. 2009....
Seroprevalence, predictors and estimated incidence of maternal and neonatal Herpes Simplex Virus type 2 infection in semi-urban women in Kilifi, KenyaJoyce U Nyiro
Centre for Geographic Medicine Research Coast, Kenya Medical Research Institute, Kilifi, Kenya
BMC Infect Dis 11:155. 2011..Little is known of its epidemiology and burden in Coastal Kenya...
Incidence and clinical characteristics of group A rotavirus infections among children admitted to hospital in Kilifi, KenyaD James Nokes
Kenya Medical Research Institute, Centre for Geographic Medicine Research Coast, Kilifi, Kenya
PLoS Med 5:e153. 2008..The study objective was to accurately define the incidence and severity of group A rotavirus disease in a resource-poor setting necessary to make informed decisions on the need for vaccine prevention...
Molecular epidemiology of respiratory syncytial virus in Kilifi district, KenyaPaul D Scott
Division of Immunity and Infection, University of Birmingham, Birmingham, United Kingdom
J Med Virol 74:344-54. 2004..Samples from different sources, clearly differing in disease severity, did not differ in genotype characteristics, suggesting that disease causing variants are a general reflection of infections within this community...
Comparison of strain-specific antibody responses during primary and secondary infections with respiratory syncytial virusPaul D Scott
Department of Biological Sciences, University of Warwick, Coventry, UK
J Med Virol 79:1943-50. 2007..In conclusion, the strain-specific nature of the serum antibody response to the variable regions of the G protein of RSV observed in primary infections can become cross-reactive in subsequent reinfections...
On the determinants of population structure in antigenically diverse pathogensM Gabriela M Gomes
Ecology and Epidemiology Group, Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, UK
Proc Biol Sci 269:227-33. 2002..Results are robust to strain number, but sensitive to the mechanism of cumulative immunity...
