Thomas Kelder

Summary

Publications

  1. pmc WikiPathways: building research communities on biological pathways
    Thomas Kelder
    Department of Bioinformatics BiGCaT, Maastricht University, Maastricht, The Netherlands
    Nucleic Acids Res 40:D1301-7. 2012
  2. pmc Exploring pathway interactions in insulin resistant mouse liver
    Thomas Kelder
    Department of Bioinformatics, Maastricht University, Maastricht, The Netherlands
    BMC Syst Biol 5:127. 2011
  3. pmc The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services
    Martijn P van Iersel
    Department of Bioinformatics BiGCaT, Maastricht University, Maastricht, The Netherlands
    BMC Bioinformatics 11:5. 2010
  4. pmc Mining biological pathways using WikiPathways web services
    Thomas Kelder
    Department of Bioinformatics BiGCaT, Maastricht University, Maastricht, The Netherlands
    PLoS ONE 4:e6447. 2009
  5. pmc Presenting and exploring biological pathways with PathVisio
    Martijn P van Iersel
    Department of Bioinformatics, BiGCaT Maastricht University, Universiteitssingel 40, 6229 ER Maastricht, The Netherlands
    BMC Bioinformatics 9:399. 2008
  6. pmc CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis
    Martina Kutmon
    Department of Bioinformatics BiGCaT, NUTRIM School for Nutrition, Toxicology and Metabolism, University of Maastricht, Maastricht, The Netherlands Netherlands Consortium for Systems Biology NCSB, Amsterdam, The Netherlands
    PLoS ONE 8:e82160. 2013

Collaborators

Detail Information

Publications7

  1. pmc WikiPathways: building research communities on biological pathways
    Thomas Kelder
    Department of Bioinformatics BiGCaT, Maastricht University, Maastricht, The Netherlands
    Nucleic Acids Res 40:D1301-7. 2012
    ..The novel use of pathway pages as supplementary material to publications, as well as the addition of tailored content for research domains, is expected to stimulate growth further...
  2. pmc Exploring pathway interactions in insulin resistant mouse liver
    Thomas Kelder
    Department of Bioinformatics, Maastricht University, Maastricht, The Netherlands
    BMC Syst Biol 5:127. 2011
    ..Interpretation of related experimental data would be facilitated by identifying relevant pathway interactions in the context of the dataset...
  3. pmc The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services
    Martijn P van Iersel
    Department of Bioinformatics BiGCaT, Maastricht University, Maastricht, The Netherlands
    BMC Bioinformatics 11:5. 2010
    ..Tools can be made to flexibly support multiple mapping services or mapping services could be combined to get broader coverage. This approach requires an interface layer between tools and mapping services...
  4. pmc Mining biological pathways using WikiPathways web services
    Thomas Kelder
    Department of Bioinformatics BiGCaT, Maastricht University, Maastricht, The Netherlands
    PLoS ONE 4:e6447. 2009
    ..Exposing WikiPathways through a web service opens up new ways of utilizing pathway information and assisting the community curation process...
  5. pmc Presenting and exploring biological pathways with PathVisio
    Martijn P van Iersel
    Department of Bioinformatics, BiGCaT Maastricht University, Universiteitssingel 40, 6229 ER Maastricht, The Netherlands
    BMC Bioinformatics 9:399. 2008
    ..The GenMAPP MAPP file format is replaced by GPML, a new XML file format that provides seamless exchange of graphical pathway information among multiple programs...
  6. pmc CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis
    Martina Kutmon
    Department of Bioinformatics BiGCaT, NUTRIM School for Nutrition, Toxicology and Metabolism, University of Maastricht, Maastricht, The Netherlands Netherlands Consortium for Systems Biology NCSB, Amsterdam, The Netherlands
    PLoS ONE 8:e82160. 2013
    ..A systems biology approach integrating our understanding on different regulators is essential in interpreting the regulation of molecular biological processes...