Kumaran Kandasamy

Summary

Publications

  1. pmc NetPath: a public resource of curated signal transduction pathways
    Kumaran Kandasamy
    Institute of Bioinformatics, International Tech Park, Bangalore 560066, India
    Genome Biol 11:R3. 2010
  2. pmc Human Protein Reference Database--2009 update
    T S Keshava Prasad
    Institute of Bioinformatics, International Tech Park, Bangalore 560 066, India
    Nucleic Acids Res 37:D767-72. 2009
  3. pmc PathBuilder--open source software for annotating and developing pathway resources
    Kumaran Kandasamy
    Institute of Bioinformatics, International Tech Park, Bangalore 560066, India
    Bioinformatics 25:2860-2. 2009
  4. pmc Prediction of candidate primary immunodeficiency disease genes using a support vector machine learning approach
    Shivakumar Keerthikumar
    Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India
    DNA Res 16:345-51. 2009
  5. doi request reprint A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani
    Harsh Pawar
    Institute of Bioinformatics, International Technology Park, Bangalore, Karnataka, India
    Proteomics 12:832-44. 2012
  6. pmc Quantitative tissue proteomics of esophageal squamous cell carcinoma for novel biomarker discovery
    Harsh Pawar
    Institute of Bioinformatics, International Technology Park, Bangalore, India
    Cancer Biol Ther 12:510-22. 2011
  7. pmc SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome
    Manoj Kumar Kashyap
    Institute of Bioinformatics, International Technology Park, Bangalore, India
    Cancer Biol Ther 10:796-810. 2010
  8. pmc Human Proteinpedia: a unified discovery resource for proteomics research
    Kumaran Kandasamy
    Institute of Bioinformatics, International Tech Park, Bangalore 560 066, India
    Nucleic Acids Res 37:D773-81. 2009
  9. pmc A compendium of potential biomarkers of pancreatic cancer
    H C Harsha
    Institute of Bioinformatics, International Technology Park, Bangalore, Karnataka, India
    PLoS Med 6:e1000046. 2009
  10. pmc Comparative proteomics of human embryonic stem cells and embryonal carcinoma cells
    Raghothama Chaerkady
    Institute of Bioinformatics, International Technology Park, Bangalore, India
    Proteomics 10:1359-73. 2010

Collaborators

  • Raghothama Chaerkady
  • Suresh Mathivanan
  • Renu Goel
  • H C Harsha
  • Praveen Kumar
  • Purvesh Khatri
  • Chris Sander
  • Sudhir Srivastava
  • Sorin Draghici
  • Sameer Kumar
  • Samir M Hanash
  • Gary D Bader
  • J Daniel Navarro
  • Akhilesh Pandey
  • Shivakumar Keerthikumar
  • Harsh Pawar
  • T S Keshava Prasad
  • Nandini A Sahasrabuddhe
  • Santosh Renuse
  • Manoj Kumar Kashyap
  • Arivusudar Marimuthu
  • Sujatha Mohan
  • Y L Ramachandra
  • Rajesh Raju
  • Jyoti Sharma
  • Babylakshmi Muthusamy
  • Abhilash Venugopal
  • Rekha V Kumar
  • Mukhtar Ahmed
  • Sahely Bhadra
  • Kohsuke Imai
  • Devi S Somanathan
  • Sandhya Rani
  • Somak Ray
  • Osamu Ohara
  • Subhashri Ramabadran
  • Chiranjib Bhattacharyya
  • Lavanya Balakrishnan
  • Nirujogi Raja Sekhar
  • Harshal Nemade
  • Sweta N Khobragade
  • Milind S Patole
  • Ghantasala S Sameer Kumar
  • Dhanashree S Kelkar
  • Jagadeesha Maharudraiah
  • Chennagiri Shrinivasamurthy Premalatha
  • M Vijayakumar
  • Kariyanakatte Veeraiah Veerendra Kumar
  • Bipin Nair
  • Sudha Rajagopalan
  • Thotterthodi Subrahmanya Keshava Prasad
  • Stephen J Meltzer
  • Thottethodi Subrahmanya Keshava Prasad
  • Yashwanth Subbannayya
  • Riaz Mahmood
  • Anil K Rustgi
  • Min Sik Kim
  • V Krishna
  • Beema Shafreen
  • Aimy Sebastian
  • Shigeaki Nonoyama
  • Prathibha Ranganathan
  • Riaz Mohmood
  • B Abdul Rahiman
  • Mitali Bhattacharjee
  • Hirokazu Kanegane
  • Sashi Kanth
  • Sutopa Banerjee
  • C J Harrys Kishore
  • Deepthi Telikicherla
  • Sashikanth Gollapudi
  • Atsushi Hijikata
  • Lakshmi Dhevi N Selvan
  • Toshio Miyawaki
  • Manoj K Kashyap

Detail Information

Publications13

  1. pmc NetPath: a public resource of curated signal transduction pathways
    Kumaran Kandasamy
    Institute of Bioinformatics, International Tech Park, Bangalore 560066, India
    Genome Biol 11:R3. 2010
    ..We anticipate NetPath to become a consolidated resource for human signaling pathways that should enable systems biology approaches...
  2. pmc Human Protein Reference Database--2009 update
    T S Keshava Prasad
    Institute of Bioinformatics, International Tech Park, Bangalore 560 066, India
    Nucleic Acids Res 37:D767-72. 2009
    ..Since the last update, more than 5500 new protein sequences have been added, making HPRD a comprehensive resource for studying the human proteome...
  3. pmc PathBuilder--open source software for annotating and developing pathway resources
    Kumaran Kandasamy
    Institute of Bioinformatics, International Tech Park, Bangalore 560066, India
    Bioinformatics 25:2860-2. 2009
    ....
  4. pmc Prediction of candidate primary immunodeficiency disease genes using a support vector machine learning approach
    Shivakumar Keerthikumar
    Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India
    DNA Res 16:345-51. 2009
    ..The remaining genes in this predicted data set represent attractive candidates for testing in patients where the etiology cannot be ascribed to any of the known PID genes...
  5. doi request reprint A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani
    Harsh Pawar
    Institute of Bioinformatics, International Technology Park, Bangalore, Karnataka, India
    Proteomics 12:832-44. 2012
    ..Here, we report results from proteomic profiling of L. donovani, an organism with an unsequenced genome...
  6. pmc Quantitative tissue proteomics of esophageal squamous cell carcinoma for novel biomarker discovery
    Harsh Pawar
    Institute of Bioinformatics, International Technology Park, Bangalore, India
    Cancer Biol Ther 12:510-22. 2011
    ..The success of our study shows that this mass spectrometric strategy can be applied to cancers in general to develop a panel of candidate biomarkers, which can then be validated by other techniques...
  7. pmc SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome
    Manoj Kumar Kashyap
    Institute of Bioinformatics, International Technology Park, Bangalore, India
    Cancer Biol Ther 10:796-810. 2010
    ..Hence, we conclude that these potential biomarkers are excellent candidates for further evaluation to test their role and efficacy in the early detection of ESCC...
  8. pmc Human Proteinpedia: a unified discovery resource for proteomics research
    Kumaran Kandasamy
    Institute of Bioinformatics, International Tech Park, Bangalore 560 066, India
    Nucleic Acids Res 37:D773-81. 2009
    ..Human Proteinpedia should serve as an integrated platform to store, integrate and disseminate such proteomic data and is inching towards evolving into a unified human proteomics resource...
  9. pmc A compendium of potential biomarkers of pancreatic cancer
    H C Harsha
    Institute of Bioinformatics, International Technology Park, Bangalore, Karnataka, India
    PLoS Med 6:e1000046. 2009
    ..Akhilesh Pandey and colleagues describe a compendium of potential biomarkers that can be systematically validated by the pancreatic cancer community...
  10. pmc Comparative proteomics of human embryonic stem cells and embryonal carcinoma cells
    Raghothama Chaerkady
    Institute of Bioinformatics, International Technology Park, Bangalore, India
    Proteomics 10:1359-73. 2010
    ..In summary, this is the first large-scale quantitative proteomic study of human ESCs and ECCs, which provides critical information about the regulators of these two closely related, but developmentally distinct, stem cells...
  11. pmc RAPID: Resource of Asian Primary Immunodeficiency Diseases
    Shivakumar Keerthikumar
    Institute of Bioinformatics, International Technology Park, Bangalore 560 066, India
    Nucleic Acids Res 37:D863-7. 2009
    ..Thus, information contained in this database should help physicians and other biomedical investigators to further investigate the role of these molecules in PID...
  12. doi request reprint Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology
    T S Keshava Prasad
    Institute of Bioinformatics, Bangalore, India
    Methods Mol Biol 577:67-79. 2009
    ....
  13. pmc An evaluation of human protein-protein interaction data in the public domain
    Suresh Mathivanan
    Institute of Bioinformatics, International Technology Park, Bangalore, India
    BMC Bioinformatics 7:S19. 2006
    ..A number of publicly available repositories for human PPIs are currently available. Each of these databases has their own unique features with a large variation in the type and depth of their annotations...