Ivan Junier

Summary

Publications

  1. doi request reprint Polymer modeling of the E. coli genome reveals the involvement of locus positioning and macrodomain structuring for the control of chromosome conformation and segregation
    Ivan Junier
    Centre for Genomic Regulation CRG, Dr Aiguader 88, 08003 Barcelona, Spain, Universitat Pompeu Fabra UPF, 08003 Barcelona, Spain, CGM CNRS, Universite Paris Sud, 1 Avenue de la Terrasse, 91198 Gif sur Yvette, France and CIRB Collège de France, 11 place Marcelin Berthelot, 75231 Paris Cedex 05, France
    Nucleic Acids Res 42:1461-73. 2014
  2. pmc CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus
    Ivan Junier
    Epigenomics Project and institute of Systems and Synthetic Biology, Genopole, CNRS, University of Evry, 5 rue Henri Desbrueres, Evry F 91030, Institute of Complex Systems, Paris, France
    Nucleic Acids Res 40:7718-27. 2012
  3. doi request reprint Genomic organization of evolutionarily correlated genes in bacteria: limits and strategies
    Ivan Junier
    Epigenomics Project Institute of Systems and Synthetic Biology, Genopole, CNRS, University of Evry, 91030 Evry, France
    J Mol Biol 419:369-86. 2012
  4. pmc PreCisIon: PREdiction of CIS-regulatory elements improved by gene's positION
    Mohamed Elati
    Institute of Systems and Synthetic Biology, CNRS, University of Evry, Genopole, 91030 Evry, France
    Nucleic Acids Res 41:1406-15. 2013
  5. pmc Periodic pattern detection in sparse boolean sequences
    Ivan Junier
    Epigenomics Project, Genopole, CNRS UPS3201, UniverSud Paris, University of Evry, Genopole Campus 1 Genavenir 6, 5 rue Henri Desbruères F 91030 EVRY cedex, France
    Algorithms Mol Biol 5:31. 2010
  6. doi request reprint The layout of a bacterial genome
    Francois Kepes
    Epigenomics Project, Institute of Systems and Synthetic Biology, CNRS, University of Evry, France
    FEBS Lett 586:2043-8. 2012

Collaborators

Detail Information

Publications6

  1. doi request reprint Polymer modeling of the E. coli genome reveals the involvement of locus positioning and macrodomain structuring for the control of chromosome conformation and segregation
    Ivan Junier
    Centre for Genomic Regulation CRG, Dr Aiguader 88, 08003 Barcelona, Spain, Universitat Pompeu Fabra UPF, 08003 Barcelona, Spain, CGM CNRS, Universite Paris Sud, 1 Avenue de la Terrasse, 91198 Gif sur Yvette, France and CIRB Collège de France, 11 place Marcelin Berthelot, 75231 Paris Cedex 05, France
    Nucleic Acids Res 42:1461-73. 2014
    ....
  2. pmc CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus
    Ivan Junier
    Epigenomics Project and institute of Systems and Synthetic Biology, Genopole, CNRS, University of Evry, 5 rue Henri Desbrueres, Evry F 91030, Institute of Complex Systems, Paris, France
    Nucleic Acids Res 40:7718-27. 2012
    ..Our findings show that an ensemble of CTCF contacts functionally affects spatial distances between control elements and target genes contributing to chromosomal organization required for transcription...
  3. doi request reprint Genomic organization of evolutionarily correlated genes in bacteria: limits and strategies
    Ivan Junier
    Epigenomics Project Institute of Systems and Synthetic Biology, Genopole, CNRS, University of Evry, 91030 Evry, France
    J Mol Biol 419:369-86. 2012
    ..The transition at 20 genes is reminiscent of the size of the longest operons and of topological microdomains. The range for which DNA neighborhood optimizes biochemical interactions might therefore be defined by DNA topology...
  4. pmc PreCisIon: PREdiction of CIS-regulatory elements improved by gene's positION
    Mohamed Elati
    Institute of Systems and Synthetic Biology, CNRS, University of Evry, Genopole, 91030 Evry, France
    Nucleic Acids Res 41:1406-15. 2013
    ..The newly predicted gene targets are demonstrated to be functionally consistent with previously known targets, as assessed by analysis of Gene Ontology enrichment or of the relevant literature and databases...
  5. pmc Periodic pattern detection in sparse boolean sequences
    Ivan Junier
    Epigenomics Project, Genopole, CNRS UPS3201, UniverSud Paris, University of Evry, Genopole Campus 1 Genavenir 6, 5 rue Henri Desbruères F 91030 EVRY cedex, France
    Algorithms Mol Biol 5:31. 2010
    ..e. sequences of the type 010011011010... where the ratio of the number of 1's (denoting here the transcription start of a gene) to 0's is small...
  6. doi request reprint The layout of a bacterial genome
    Francois Kepes
    Epigenomics Project, Institute of Systems and Synthetic Biology, CNRS, University of Evry, France
    FEBS Lett 586:2043-8. 2012
    ..On the basis of this analysis, lessons are drawn for full genome design...