Toshiaki Katayama

Summary

Affiliation: University of Tokyo
Country: Japan

Publications

  1. pmc TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services
    Toshiaki Katayama
    Human Genome Center, Institute of Medical Science, University of Tokyo, 4 6 1 Shirokane dai, Minato ku, Tokyo 108 8639, Japan
    Nucleic Acids Res 38:W706-11. 2010
  2. pmc The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 2:4. 2011
  3. pmc The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 1:8. 2010
  4. pmc The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16, Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 4:6. 2013
  5. pmc CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes
    Takatomo Fujisawa
    Center for Information Biology, National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411 8540, Japan, Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo 113 0032, Japan, Faculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita ku, Kyoto 603 8555, Japan and Kazusa DNA Research Institute, 2 6 7 Kazusa Kamatari, Kisarazu 292 0818, Japan
    Nucleic Acids Res 42:D666-70. 2014
  6. ncbi request reprint TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model
    Shin Kawano
    Database Center for Life Science, Research Organization of Information and Systems, 178 4 4 Wakashiba, Kashiwa, Chiba 277 0871, Japan
    Nucleic Acids Res 42:W442-8. 2014
  7. pmc Two novel heat-soluble protein families abundantly expressed in an anhydrobiotic tardigrade
    Ayami Yamaguchi
    Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan
    PLoS ONE 7:e44209. 2012
  8. pmc AAindex: amino acid index database, progress report 2008
    Shuichi Kawashima
    Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4 6 1 Shirokane dai Minato ku Tokyo 108 8639, Japan
    Nucleic Acids Res 36:D202-5. 2008
  9. pmc Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009
    Hiroyuki Wakaguri
    Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo 4 6 1, Shirokanedai, Minatoku, Tokyo 108 8639, Japan
    Nucleic Acids Res 37:D520-5. 2009

Detail Information

Publications9

  1. pmc TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services
    Toshiaki Katayama
    Human Genome Center, Institute of Medical Science, University of Tokyo, 4 6 1 Shirokane dai, Minato ku, Tokyo 108 8639, Japan
    Nucleic Acids Res 38:W706-11. 2010
    ..The TogoWS SOAP API resolves compatibility issues found on the server and client-side SOAP implementations. The TogoWS service is freely available at: http://togows.dbcls.jp/...
  2. pmc The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 2:4. 2011
    ..abstract:..
  3. pmc The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 1:8. 2010
    ....
  4. pmc The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16, Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 4:6. 2013
    ....
  5. pmc CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes
    Takatomo Fujisawa
    Center for Information Biology, National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411 8540, Japan, Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo 113 0032, Japan, Faculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita ku, Kyoto 603 8555, Japan and Kazusa DNA Research Institute, 2 6 7 Kazusa Kamatari, Kisarazu 292 0818, Japan
    Nucleic Acids Res 42:D666-70. 2014
    ..Advanced users can also retrieve this information through the representational state transfer-based web application programming interface in an automated manner. ..
  6. ncbi request reprint TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model
    Shin Kawano
    Database Center for Life Science, Research Organization of Information and Systems, 178 4 4 Wakashiba, Kashiwa, Chiba 277 0871, Japan
    Nucleic Acids Res 42:W442-8. 2014
    ..We believe that TogoTable is a valuable Web tool, particularly for experimental biologists who need to process huge amounts of data such as high-throughput experimental output. ..
  7. pmc Two novel heat-soluble protein families abundantly expressed in an anhydrobiotic tardigrade
    Ayami Yamaguchi
    Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan
    PLoS ONE 7:e44209. 2012
    ..Tardigrades might have evolved novel protein families with a heat-soluble property and this study revealed a novel repertoire of major heat-soluble proteins in these anhydrobiotic animals...
  8. pmc AAindex: amino acid index database, progress report 2008
    Shuichi Kawashima
    Laboratory of Genome Database, Human Genome Center, Institute of Medical Science, University of Tokyo, 4 6 1 Shirokane dai Minato ku Tokyo 108 8639, Japan
    Nucleic Acids Res 36:D202-5. 2008
    ..The database can be accessed through the DBGET/LinkDB system at GenomeNet (http://www.genome.jp/dbget-bin/www_bfind?aaindex) or downloaded by anonymous FTP (ftp://ftp.genome.jp/pub/db/community/aaindex/)...
  9. pmc Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009
    Hiroyuki Wakaguri
    Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo 4 6 1, Shirokanedai, Minatoku, Tokyo 108 8639, Japan
    Nucleic Acids Res 37:D520-5. 2009
    ..Full-Malaria/Parasites and Full-Arthropods are accessible from http://fullmal.hgc.jp/...