Masahira Hattori

Summary

Affiliation: University of Tokyo
Country: Japan

Publications

  1. pmc The human intestinal microbiome: a new frontier of human biology
    Masahira Hattori
    Graduate School of Frontier Sciences, The University of Tokyo, 5 1 5 Kasiwanoha, Kashiwa, Chiba 277 8561, Japan
    DNA Res 16:1-12. 2009
  2. pmc Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes
    Mikihiko Kawai
    Department of Medical Genome Sciences, Graduate School of Frontier Sciences, University of Tokyo, Minato ku, Tokyo, 108 8639, Japan
    BMC Microbiol 11:104. 2011
  3. pmc Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content
    Fumito Maruyama
    Division of Bacteriology, Department of Infectious Diseases Control, International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo 108 8639, Japan
    BMC Genomics 10:358. 2009
  4. pmc The identification and functional implications of human-specific "fixed" amino acid substitutions in the glutamate receptor family
    Hiroki Goto
    Division of Human Moelcular Genetics, Research Center for Genetic Information, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812 8582, Japan
    BMC Evol Biol 9:224. 2009
  5. pmc Birth and death of genes linked to chromosomal inversion
    Yoshikazu Furuta
    Department of Medical Genome Sciences, Graduate School of Frontier Sciences, University of Tokyo, Minato ku, Tokyo 108 8639, Japan
    Proc Natl Acad Sci U S A 108:1501-6. 2011
  6. pmc Complete genome sequence of the denitrifying and N2O-reducing bacterium Azoarcus sp. strain KH32C
    Tomoyasu Nishizawa
    Department of Applied Biological Chemistry, The University of Tokyo, Yayoi, Bunkyo ku, Tokyo, Japan
    J Bacteriol 194:1255. 2012
  7. ncbi request reprint Analysis of early bacterial communities on volcanic deposits on the island of Miyake (Miyake-jima), Japan: a 6-year study at a fixed site
    Reiko Fujimura
    United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu shi, Tokyo, Japan
    Microbes Environ 27:19-29. 2012
  8. pmc Complete genome sequence of the serotype k Streptococcus mutans strain LJ23
    Chihiro Aikawa
    Section of Bacterial Pathogenesis, Tokyo Medical and Dental University Graduate School of Medical and Dental Sciences, Tokyo, Japan
    J Bacteriol 194:2754-5. 2012
  9. doi request reprint Genome-wide profiling of DNA methylation in human cancer cells
    Katsumi Ogoshi
    Department of Molecular Preventive Medicine, Graduate School of Medicine, The University of Tokyo, 7 3 1 Hongo, Bunkyo ku, Tokyo 113 0033, Japan
    Genomics 98:280-7. 2011
  10. pmc Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis
    Satoshi Ishii
    Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1 1 1 Yayoi, Bunkyo ku, Tokyo 113 8657, Japan
    Appl Environ Microbiol 75:7070-8. 2009

Collaborators

  • Satoshi Ishii
  • Tomoyasu Nishizawa
  • Ikuo Uchiyama
  • Naofumi Handa
  • Kanako Tago
  • Ichiro Nakagawa
  • Hiroyuki Ohta
  • Kouji Matsushima
  • Kazuhiko Nakano
  • Sumio Sugano
  • Shin Ichi Hashimoto
  • Yoichiro Nakatani
  • Atsushi Toyoda
  • Kenshiro Oshima
  • Yoshikazu Furuta
  • Mikihiko Kawai
  • Ken Kurokawa
  • Fumito Maruyama
  • Chihiro Aikawa
  • Reiko Fujimura
  • Masaru Yoshida
  • Noriko Takahashi
  • Ichizo Kobayashi
  • Katsumi Ogoshi
  • Koji Yahara
  • Takeshi Tsuru
  • Takeshi Azuma
  • Takashi Ooshima
  • Hidehiro Toh
  • Hiroki Goto
  • Shinichi Morishita
  • Fumihito Miura
  • Asuka Furukawa
  • Takashi Kamijo
  • Kenji Nanba
  • Yoshinori Sato
  • Nayuta Furukawa
  • Kana Minegishi
  • Takayasu Watanabe
  • Yoshinobu Eishi
  • Katsushi Tokunaga
  • Wei Qu
  • Sang Hee Park
  • Hiroyuki Sasamoto
  • Kikuji Itoh
  • Todd D Taylor
  • Yoshitoshi Ogura
  • Tadasuke Ooka
  • Tetsuya Hayashi
  • Sunao Iyoda
  • Hidetoshi Morita
  • Ryota Nomura
  • Rui Kageyama
  • Kenta Nakai
  • Yasuyuki Fukumaki
  • Yoko Kuroki
  • Kazunori Watanabe
  • Atsuo Sakurai
  • Hiroki Shibata
  • Asao Fujiyama
  • Keishin Nishida
  • Shigeyuki Hamada
  • Shigetada Kawabata
  • Yoshiyuki Sakaki
  • Kunika Tanaka
  • Mitsuhiko Kobata
  • Naozumi Araragi
  • Takashi Ito
  • Jun Sese
  • Noriko Kawaguchi

Detail Information

Publications13

  1. pmc The human intestinal microbiome: a new frontier of human biology
    Masahira Hattori
    Graduate School of Frontier Sciences, The University of Tokyo, 5 1 5 Kasiwanoha, Kashiwa, Chiba 277 8561, Japan
    DNA Res 16:1-12. 2009
    ....
  2. pmc Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes
    Mikihiko Kawai
    Department of Medical Genome Sciences, Graduate School of Frontier Sciences, University of Tokyo, Minato ku, Tokyo, 108 8639, Japan
    BMC Microbiol 11:104. 2011
    ..We used newly developed comparative methods to follow the evolution of East Asian H. pylori genomes using 20 complete genome sequences from Japanese, Korean, Amerind, European, and West African strains...
  3. pmc Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content
    Fumito Maruyama
    Division of Bacteriology, Department of Infectious Diseases Control, International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo 108 8639, Japan
    BMC Genomics 10:358. 2009
    ..While the pathogenicity of this species is distinct from other human pathogenic streptococci, the species-specific evolution of the genus Streptococcus and its genomic diversity are poorly understood...
  4. pmc The identification and functional implications of human-specific "fixed" amino acid substitutions in the glutamate receptor family
    Hiroki Goto
    Division of Human Moelcular Genetics, Research Center for Genetic Information, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812 8582, Japan
    BMC Evol Biol 9:224. 2009
    ..To clarify the evolutionary dynamics and mechanisms of the GluR genes in the lineage leading to humans, we determined the complete sequences of the coding regions and splice sites of 26 chimpanzee GluR genes...
  5. pmc Birth and death of genes linked to chromosomal inversion
    Yoshikazu Furuta
    Department of Medical Genome Sciences, Graduate School of Frontier Sciences, University of Tokyo, Minato ku, Tokyo 108 8639, Japan
    Proc Natl Acad Sci U S A 108:1501-6. 2011
    ..These results will guide the interpretation of extensive DNA sequencing results for understanding long- and short-term genome evolution in various organisms and in cancer cells...
  6. pmc Complete genome sequence of the denitrifying and N2O-reducing bacterium Azoarcus sp. strain KH32C
    Tomoyasu Nishizawa
    Department of Applied Biological Chemistry, The University of Tokyo, Yayoi, Bunkyo ku, Tokyo, Japan
    J Bacteriol 194:1255. 2012
    ..strain KH32C. The genome is composed of one chromosome and one megaplasmid and contains genes for plant-microbe interactions and the gene clusters for aromatic-compound degradations...
  7. ncbi request reprint Analysis of early bacterial communities on volcanic deposits on the island of Miyake (Miyake-jima), Japan: a 6-year study at a fixed site
    Reiko Fujimura
    United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu shi, Tokyo, Japan
    Microbes Environ 27:19-29. 2012
    ..The detection of known 16S rRNA gene sequences from Fe(III)-reducing acidophiles promoted us to propose the acidity-driven iron cycle for the early microbial ecosystem on the deposit...
  8. pmc Complete genome sequence of the serotype k Streptococcus mutans strain LJ23
    Chihiro Aikawa
    Section of Bacterial Pathogenesis, Tokyo Medical and Dental University Graduate School of Medical and Dental Sciences, Tokyo, Japan
    J Bacteriol 194:2754-5. 2012
    ..Here we report the complete genome sequence of serotype k S. mutans strain LJ23, which was recently isolated from the oral cavity of a Japanese patient...
  9. doi request reprint Genome-wide profiling of DNA methylation in human cancer cells
    Katsumi Ogoshi
    Department of Molecular Preventive Medicine, Graduate School of Medicine, The University of Tokyo, 7 3 1 Hongo, Bunkyo ku, Tokyo 113 0033, Japan
    Genomics 98:280-7. 2011
    ..The MSDS method has the potential to provide novel insight into the functional complexity of the human genome...
  10. pmc Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis
    Satoshi Ishii
    Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1 1 1 Yayoi, Bunkyo ku, Tokyo 113 8657, Japan
    Appl Environ Microbiol 75:7070-8. 2009
    ..Therefore, OTUs related to Herbaspirillum are potential key players in nitrate respiration and denitrification under the conditions used...
  11. ncbi request reprint [Disease and metagenomics of intestinal microbiomes]
    Masahira Hattori
    Graduate School of Frontier Sciences, The University of Tokyo
    Nihon Rinsho 67:1214-8. 2009
    ..The International Human Microbiome Project was recently launched to further promote this newly developing field, which will provide new strategies for the maintenance of human health...
  12. pmc A large-scale full-length cDNA analysis to explore the budding yeast transcriptome
    Fumihito Miura
    Department of Computational Biology, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa 277 8561, Japan
    Proc Natl Acad Sci U S A 103:17846-51. 2006
    ..The budding yeast will serve as a versatile model for the studies on these aspects of transcriptome, and the full-length cDNA clones can function as an invaluable resource in such studies...
  13. pmc Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2
    Hidehiro Toh
    Advanced Science Institute, RIKEN, Yokohama, Kanagawa, Japan
    J Bacteriol 192:1165-6. 2010
    ..coli phylogenetic group B2, which includes the majority of extraintestinal pathogenic E. coli. Here, we report the finished and annotated genome sequence of this organism...