Todd D Taylor

Summary

Affiliation: RIKEN Brain Science Institute
Country: Japan

Publications

  1. pmc After 'completion': the changing face of human chromosomes 21 and 22
    Todd Duane Taylor
    RIKEN Genomic Sciences Center, Human Genome Research Group, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Genome Biol 5:111. 2004
  2. ncbi request reprint Human chromosome 11 DNA sequence and analysis including novel gene identification
    Todd D Taylor
    RIKEN Genomic Sciences Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Nature 440:497-500. 2006
  3. ncbi request reprint Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway
    Yoko Kuroki
    RIKEN Genomic Sciences Center, Yokohama 230 0045, Japan
    Nat Genet 38:158-67. 2006
  4. ncbi request reprint Acetate-producing bifidobacteria protect the host from enteropathogenic infection via carbohydrate transporters
    Shinji Fukuda
    Laboratory for Epithelial Immunobiology, RIKEN Research Center for Allergy and Immunology, Yokohama, Japan
    Gut Microbes 3:449-54. 2012
  5. pmc Fast and accurate taxonomic assignments of metagenomic sequences using MetaBin
    Vineet K Sharma
    Laboratory for MetaSystems Research, Quantitative Biology Center, RIKEN, Yokohama, Kanagawa, Japan
    PLoS ONE 7:e34030. 2012
  6. doi request reprint Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation
    Tulika Prakash
    Laboratory for MetaSystems Research, Quantitative Biology Center, RIKEN, Yokohama, Kanagawa, Japan
    Cell Host Microbe 10:273-84. 2011
  7. pmc Expression of conjoined genes: another mechanism for gene regulation in eukaryotes
    Tulika Prakash
    MetaSystems Research Team, Computational Systems Biology Research Group, Advanced Computational Sciences Department, RIKEN Advanced Science Institute, Yokohama, Japan
    PLoS ONE 5:e13284. 2010
  8. pmc Comparative genomic sequence analysis of the human chromosome 21 Down syndrome critical region
    Atsushi Toyoda
    Human Genome Research Group, Genomic Sciences Center, RIKEN Yokohama Institute, 1 7 22, Suehiro cho, Tsurumi ku, Yokohama, Kanagawa, Japan
    Genome Res 12:1323-32. 2002
  9. doi request reprint Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut
    Yuichi Hongoh
    Ecomolecular Biorecycling Science Research Team, RIKEN Advanced Science Institute, Saitama 351 0198, Japan
    Science 322:1108-9. 2008
  10. ncbi request reprint Construction and analysis of a human-chimpanzee comparative clone map
    Asao Fujiyama
    RIKEN Genomic Sciences Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Science 295:131-4. 2002

Collaborators

Detail Information

Publications14

  1. pmc After 'completion': the changing face of human chromosomes 21 and 22
    Todd Duane Taylor
    RIKEN Genomic Sciences Center, Human Genome Research Group, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Genome Biol 5:111. 2004
    ..There is now considerably more gene-expression evidence to support predicted genes, and the annotation of functions for previously unknown genes, including those implicated in disease, is gradually improving...
  2. ncbi request reprint Human chromosome 11 DNA sequence and analysis including novel gene identification
    Todd D Taylor
    RIKEN Genomic Sciences Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Nature 440:497-500. 2006
    ..5 million base pairs representing 99.8% coverage of the euchromatic sequence--provide scientists with a solid foundation for understanding the genetic basis of these disorders and other biological phenomena...
  3. ncbi request reprint Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway
    Yoko Kuroki
    RIKEN Genomic Sciences Center, Yokohama 230 0045, Japan
    Nat Genet 38:158-67. 2006
    ..Reconstruction of the common ancestral Y chromosome reflects the dynamic changes in our genomes in the 5-6 million years since speciation...
  4. ncbi request reprint Acetate-producing bifidobacteria protect the host from enteropathogenic infection via carbohydrate transporters
    Shinji Fukuda
    Laboratory for Epithelial Immunobiology, RIKEN Research Center for Allergy and Immunology, Yokohama, Japan
    Gut Microbes 3:449-54. 2012
    ..As demonstrated here, our multi-omics approach provides a powerful strategy for evaluation of host-microbial interactions in the complex gut ecosystem...
  5. pmc Fast and accurate taxonomic assignments of metagenomic sequences using MetaBin
    Vineet K Sharma
    Laboratory for MetaSystems Research, Quantitative Biology Center, RIKEN, Yokohama, Kanagawa, Japan
    PLoS ONE 7:e34030. 2012
    ..MetaBin web server and a standalone version for high-throughput analysis are available freely at http://metabin.riken.jp/...
  6. doi request reprint Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation
    Tulika Prakash
    Laboratory for MetaSystems Research, Quantitative Biology Center, RIKEN, Yokohama, Kanagawa, Japan
    Cell Host Microbe 10:273-84. 2011
    ..However, SFB lack most of the clostridial virulence-related genes. Comparative analysis with clostridial genomes suggested possible mechanisms for host responses and specific adaptations in the intestine...
  7. pmc Expression of conjoined genes: another mechanism for gene regulation in eukaryotes
    Tulika Prakash
    MetaSystems Research Team, Computational Systems Biology Research Group, Advanced Computational Sciences Department, RIKEN Advanced Science Institute, Yokohama, Japan
    PLoS ONE 5:e13284. 2010
    ..In summary, our findings reveal new insights about the functionality of CGs in terms of another possible mechanism for gene regulation and genomic evolution and the mechanism leading to their formation...
  8. pmc Comparative genomic sequence analysis of the human chromosome 21 Down syndrome critical region
    Atsushi Toyoda
    Human Genome Research Group, Genomic Sciences Center, RIKEN Yokohama Institute, 1 7 22, Suehiro cho, Tsurumi ku, Yokohama, Kanagawa, Japan
    Genome Res 12:1323-32. 2002
    ..Gene prediction programs give different results when used to analyze the well-conserved regions between mouse and human sequences. Our findings have implications for evolution and for modeling the genetic basis of DS in mice...
  9. doi request reprint Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut
    Yuichi Hongoh
    Ecomolecular Biorecycling Science Research Team, RIKEN Advanced Science Institute, Saitama 351 0198, Japan
    Science 322:1108-9. 2008
    ..Thus, nitrogen fixation and cellulolysis are coupled within the protist's cells. This highly evolved symbiotic system probably underlies the ability of the worldwide pest termites Coptotermes to use wood as their sole food...
  10. ncbi request reprint Construction and analysis of a human-chimpanzee comparative clone map
    Asao Fujiyama
    RIKEN Genomic Sciences Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Science 295:131-4. 2002
    ..We detected candidate positions, including two clusters on human chromosome 21 that suggest large, nonrandom regions of difference between the two genomes...
  11. pmc MetaBioME: a database to explore commercially useful enzymes in metagenomic datasets
    Vineet K Sharma
    MetaSystems Research Team, Computational Systems Biology Research Group, Advanced Computational Sciences Department, Advanced Science Institute, RIKEN, Yokohama, Kanagawa 230 0045, Japan
    Nucleic Acids Res 38:D468-72. 2010
    ..Using MetaBioME, we have identified several novel homologues to known CUEs that can potentially serve as leads for further experimental verification...
  12. pmc Functional assignment of metagenomic data: challenges and applications
    Tulika Prakash
    Laboratory for MetaSystems Research at RIKEN, Japan
    Brief Bioinform 13:711-27. 2012
    ..Finally, we provide some examples of applications from recent metagenomic studies which have been successfully conducted in spite of the known difficulties...
  13. doi request reprint Bifidobacteria can protect from enteropathogenic infection through production of acetate
    Shinji Fukuda
    Laboratory for Epithelial Immunobiology, RIKEN Research Center for Allergy and Immunology, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Nature 469:543-7. 2011
    ..We propose that acetate produced by protective bifidobacteria improves intestinal defence mediated by epithelial cells and thereby protects the host against lethal infection...
  14. pmc Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2
    Hidehiro Toh
    Advanced Science Institute, RIKEN, Yokohama, Kanagawa, Japan
    J Bacteriol 192:1165-6. 2010
    ..coli phylogenetic group B2, which includes the majority of extraintestinal pathogenic E. coli. Here, we report the finished and annotated genome sequence of this organism...