Kazuo Shinozaki

Summary

Affiliation: RIKEN Brain Science Institute
Country: Japan

Publications

  1. ncbi request reprint Gene networks involved in drought stress response and tolerance
    Kazuo Shinozaki
    RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, 203 0045 Japan
    J Exp Bot 58:221-7. 2007
  2. doi request reprint Identification of the candidate genes regulated by RNA-directed DNA methylation in Arabidopsis
    Yukio Kurihara
    Plant Genomic Network Research Team, Plant Functional Genomics Research Group, RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama shi, Kanagawa 230 0045, Japan
    Biochem Biophys Res Commun 376:553-7. 2008
  3. pmc RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome
    Tetsuya Sakurai
    Bioinformatics Group, RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama 230 0045, Japan
    Nucleic Acids Res 33:D647-50. 2005
  4. pmc Genomics and bioinformatics resources for crop improvement
    Keiichi Mochida
    RIKEN Plant Science Center, Yokohama, 230 0045 Japan
    Plant Cell Physiol 51:497-523. 2010
  5. pmc Molecular basis of the core regulatory network in ABA responses: sensing, signaling and transport
    Taishi Umezawa
    Gene Discovery Research Group, RIKEN Plant Science Center, 3 1 1 Kouyadai, Tsukuba, Ibaraki, 305 0074 Japan
    Plant Cell Physiol 51:1821-39. 2010
  6. pmc Characterization of the promoter region of an Arabidopsis gene for 9-cis-epoxycarotenoid dioxygenase involved in dehydration-inducible transcription
    Babak Behnam
    Gene Discovery Research Group, RIKEN Center for Sustainable Resource Science, 3 1 1 Koyadai, Tsukuba 305 0074, Japan
    DNA Res 20:315-24. 2013
  7. pmc Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs
    Kei Iida
    Nagahama Institute of Bio Science and Technology, 1266 Tamura, Nagahama, Shiga 526 0829, Japan
    DNA Res 16:155-64. 2009
  8. pmc Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells
    Takamitsu Kurusu
    Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, Japan
    BMC Plant Biol 12:11. 2012
  9. pmc A flexible representation of omic knowledge for thorough analysis of microarray data
    Yoshikazu Hasegawa
    Phenome Informatics Team, Functional Genomics Research Group, Genomic Sciences Center, RIKEN, Suehiro, Tsurumi, Yokohama, Kanagawa, Japan
    Plant Methods 2:5. 2006
  10. pmc Effects of abiotic stress on plants: a systems biology perspective
    Grant R Cramer
    Department of Biochemistry and Molecular Biology, Mail Stop 330, University of Nevada, Reno, Nevada 89557, USA
    BMC Plant Biol 11:163. 2011

Detail Information

Publications155 found, 100 shown here

  1. ncbi request reprint Gene networks involved in drought stress response and tolerance
    Kazuo Shinozaki
    RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, 203 0045 Japan
    J Exp Bot 58:221-7. 2007
    ..A description is also provided of how various genes involved in stress tolerance were applied in genetic engineering of dehydration stress tolerance in transgenic Arabidopsis plants...
  2. doi request reprint Identification of the candidate genes regulated by RNA-directed DNA methylation in Arabidopsis
    Yukio Kurihara
    Plant Genomic Network Research Team, Plant Functional Genomics Research Group, RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama shi, Kanagawa 230 0045, Japan
    Biochem Biophys Res Commun 376:553-7. 2008
    ..Our study provided important information for understanding the relationship between RdDM and the identified candidate genes...
  3. pmc RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome
    Tetsuya Sakurai
    Bioinformatics Group, RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama 230 0045, Japan
    Nucleic Acids Res 33:D647-50. 2005
    ..The RARGE web interface can be accessed at http://rarge.gsc.riken.jp/. Additionally, we report 90 000 new RAFL cDNA clones here...
  4. pmc Genomics and bioinformatics resources for crop improvement
    Keiichi Mochida
    RIKEN Plant Science Center, Yokohama, 230 0045 Japan
    Plant Cell Physiol 51:497-523. 2010
    ..We review recent advances in research platforms and resources in plant omics together with related databases and advances in technology...
  5. pmc Molecular basis of the core regulatory network in ABA responses: sensing, signaling and transport
    Taishi Umezawa
    Gene Discovery Research Group, RIKEN Plant Science Center, 3 1 1 Kouyadai, Tsukuba, Ibaraki, 305 0074 Japan
    Plant Cell Physiol 51:1821-39. 2010
    ..Our knowledge of ABA responses in plants has been greatly expanded from intracellular signaling to intercellular transport of ABA...
  6. pmc Characterization of the promoter region of an Arabidopsis gene for 9-cis-epoxycarotenoid dioxygenase involved in dehydration-inducible transcription
    Babak Behnam
    Gene Discovery Research Group, RIKEN Center for Sustainable Resource Science, 3 1 1 Koyadai, Tsukuba 305 0074, Japan
    DNA Res 20:315-24. 2013
    ..We discuss the possible transcriptional regulatory system of dehydration-responsive AtNCED3 expression, and how this may control the level of ABA under water-deficit conditions. ..
  7. pmc Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs
    Kei Iida
    Nagahama Institute of Bio Science and Technology, 1266 Tamura, Nagahama, Shiga 526 0829, Japan
    DNA Res 16:155-64. 2009
    ..Our current results are consistent with our previous observations, which showed changes in AS profiles under different conditions, and suggest the involvement of hypothetical cis- and trans-acting factors in the regulation of AS events...
  8. pmc Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells
    Takamitsu Kurusu
    Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, Japan
    BMC Plant Biol 12:11. 2012
    ..However, molecular bases and regulatory mechanisms for early osmotic signaling events remain poorly elucidated...
  9. pmc A flexible representation of omic knowledge for thorough analysis of microarray data
    Yoshikazu Hasegawa
    Phenome Informatics Team, Functional Genomics Research Group, Genomic Sciences Center, RIKEN, Suehiro, Tsurumi, Yokohama, Kanagawa, Japan
    Plant Methods 2:5. 2006
    ..GSCope3 and BiKLi are available for academic users at our web site http://omicspace.riken.jp...
  10. pmc Effects of abiotic stress on plants: a systems biology perspective
    Grant R Cramer
    Department of Biochemistry and Molecular Biology, Mail Stop 330, University of Nevada, Reno, Nevada 89557, USA
    BMC Plant Biol 11:163. 2011
    ..New insights obtained from the integration of omics datasets are highlighted. Gaps in our knowledge are identified, providing additional focus areas for crop improvement research in the future...
  11. pmc A simple and high-sensitivity method for analysis of ubiquitination and polyubiquitination based on wheat cell-free protein synthesis
    Hirotaka Takahashi
    Cell Free Science and Technology Research Center, Ehime University, Matsuyama 790 8577, Japan
    BMC Plant Biol 9:39. 2009
    ..Here we demonstrate a novel, simple and high-sensitive method for in vitro analysis of ubiquitination and polyubiquitination based on wheat cell-free protein synthesis and luminescent detection...
  12. pmc Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila
    Teruaki Taji
    Faculty of Applied Bioscience, Tokyo University of Agriculture, 1 1 1 Sakuragaoka, Setagaya Ku, Tokyo 156 8502, Japan
    BMC Plant Biol 8:115. 2008
    ..Furthermore, Thellungiella not only shows tolerance to extreme salinity stress, but also to chilling, freezing, and ozone stress, supporting the use of Thellungiella as a good genomic resource in studies of abiotic stress tolerance...
  13. pmc TriMEDB: a database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae
    Keiichi Mochida
    Plant Science Center, RIKEN, Yokohama 230 0045, Japan
    BMC Plant Biol 8:72. 2008
    ....
  14. pmc Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila
    Teruaki Taji
    Faculty of Applied Bioscience, Tokyo University of Agriculture, 1 1 1 Sakuragaoka, Setagaya Ku, Tokyo 156 8502, Japan
    BMC Plant Biol 10:261. 2010
    ..halophila from various tissues and from whole plants treated with salinity, chilling, freezing stress, or ABA. We determined the DNA sequences of 20 000 cDNAs at both the 5'- and 3' ends, and identified 9569 distinct genes...
  15. pmc Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones
    Tokihiko Nanjo
    Department of Molecular and Cell Biology, Forestry and Forest Products Research Institute FFPRI, 1 Matsunosato, Tsukuba, Ibaraki 305 8687 JAPAN
    BMC Genomics 8:448. 2007
    ..ESTs from full-length cDNA clones are especially powerful for accurate molecular annotation. We promoted collection and annotation of the ESTs from Populus full-length enriched cDNA clones as part of functional genomics of tree species...
  16. ncbi request reprint [Molecular mechanisms of abiotic stress responses: light and nutrient environment--overview]
    Kazuo Shinozaki
    Tanpakushitsu Kakusan Koso 52:585-6. 2007
  17. doi request reprint Three SnRK2 protein kinases are the main positive regulators of abscisic acid signaling in response to water stress in Arabidopsis
    Yasunari Fujita
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki, 305 8686, Japan
    Plant Cell Physiol 50:2123-32. 2009
    ..Together, our results indicate that SRK2D/E/I function as main positive regulators, and suggest that ABA signaling is controlled by the dual modulation of SRK2D/E/I and group-A PP2Cs...
  18. ncbi request reprint Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis
    Lam Son Phan Tran
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, 1 1 Ohwashi, Tsukuba, Ibaraki, Japan
    Plant J 49:46-63. 2007
    ....
  19. ncbi request reprint Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca 7000 full-length cDNA microarray
    Youko Oono
    Laboratory of Plant Molecular Biology, RIKEN Tsukuba Institute, 3 1 1 Koyadai, Tsukuba 305 0074, Japan
    Plant J 34:868-87. 2003
    ..Functional analysis of rehydration-inducible and rehydration-repressed genes revealed their functions not only in the release from a stressed status but also in the recovery of growth in plants...
  20. ncbi request reprint OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression
    Joseph G Dubouzet
    Biological Resources Division, Japan International Research Center for Agricultural Sciences JIRCAS, 1 1 Ohwashi, Tsukuba, Ibaraki 305 8686, Japan
    Plant J 33:751-63. 2003
    ..OsDREB1A is potentially useful for producing transgenic monocots that are tolerant to drought, high-salt, and/or cold stresses...
  21. doi request reprint Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy
    Kazuo Nakashima
    Biological Resources Division, Japan International Research Center for Agricultural Sciences JIRCAS, Ibaraki, Japan
    Plant Cell Physiol 50:1345-63. 2009
    ..Collectively, these results indicate that SRK2D, SRK2E and SRK2I protein kinases involved in ABA signaling are essential for the control of seed development and dormancy through the extensive control of gene expression...
  22. ncbi request reprint The regulatory domain of SRK2E/OST1/SnRK2.6 interacts with ABI1 and integrates abscisic acid (ABA) and osmotic stress signals controlling stomatal closure in Arabidopsis
    Riichiro Yoshida
    Laboratory of Plant Molecular Biology, RIKEN Tsukuba Institute, 3 1 1, Koyadai, Tsukuba, Ibaraki 305 0074, Japan
    J Biol Chem 281:5310-8. 2006
    ..Domain II interacted with the ABI1 protein in a yeast two-hybrid assay. Our results suggested that the direct interaction between SRK2E/OST1 and ABI1 through Domain II plays a critical role in the control of stomatal closure...
  23. pmc Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter
    Lam Son Phan Tran
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
    Plant Cell 16:2481-98. 2004
    ..However, erd1 was not upregulated in the transgenic plants. Other interacting factors may be necessary for the induction of erd1 in Arabidopsis under stress conditions...
  24. ncbi request reprint Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray
    Seiji Takahashi
    Laboratory of Plant Molecular Biology, RIKEN Tsukuba Institute, 3 1 1 Koyadai, Tsukuba, 305 0074, Japan
    Plant Mol Biol 56:29-55. 2004
    ..Although the expression profiles revealed that the T87 cells had most of the regulatory systems seen in Arabidopsis seedlings, the T87 cells did not have one of ABA-dependent signaling pathways...
  25. pmc Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses
    M Ashiq Rabbani
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, 1 1 Ohwashi, Tsukuba, Ibaraki 305 8686, Japan
    Plant Physiol 133:1755-67. 2003
    ..Transcriptome analysis revealed novel stress-inducible genes, suggesting some differences between Arabidopsis and rice in their response to stress...
  26. ncbi request reprint Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis
    Kazuo Nakashima
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, JIRCAS, 1 1 Ohwashi, Tsukuba, 305 8686, Japan
    Plant Mol Biol 60:51-68. 2006
    ..The expression of ABI3- and/or ABA-responsive genes and cis-elements in the promoters are discussed...
  27. pmc Identification of cis-acting promoter elements in cold- and dehydration-induced transcriptional pathways in Arabidopsis, rice, and soybean
    Kyonoshin Maruyama
    Biological Resources and Post harvest Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
    DNA Res 19:37-49. 2012
    ..In contrast, for cold-inducible promoters, the conserved hexamer sequences were diversified among these three species, suggesting the existence of diverse transcriptional regulatory pathways for cold-inducible genes among the species...
  28. pmc AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis
    Yasunari Fujita
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki
    Plant Cell 17:3470-88. 2005
    ..Thus, these data suggest that AREB1 regulates novel ABRE-dependent ABA signaling that enhances drought tolerance in vegetative tissues...
  29. pmc Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression
    Yoh Sakuma
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
    Plant Cell 18:1292-309. 2006
    ..The region between DREB2A residues 136 and 165 plays a role in the stability of this protein in the nucleus, which is important for protein activation...
  30. pmc ABA-hypersensitive germination3 encodes a protein phosphatase 2C (AtPP2CA) that strongly regulates abscisic acid signaling during germination among Arabidopsis protein phosphatase 2Cs
    Tomo Yoshida
    International Graduate School of Arts and Sciences, Yokohama City University, Tsurumi, Yokohama 230 0045, Japan
    Plant Physiol 140:115-26. 2006
    ....
  31. ncbi request reprint Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays
    Youko Oono
    Plant Functional Genomics Research Group, RIKEN Genomic Sciences Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama 230 0045, Japan
    Funct Integr Genomics 6:212-34. 2006
    ..We compared genes that are regulated during deacclimation with those regulated during rehydration after dehydration to discuss the similarity and difference of each recovery process...
  32. pmc Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress-responsive gene expression
    Feng Qin
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
    Plant Cell 20:1693-707. 2008
    ..These results suggest that DRIP1 and DRIP2 act as novel negative regulators in drought-responsive gene expression by targeting DREB2A to 26S proteasome proteolysis...
  33. ncbi request reprint Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice
    Kazuo Nakashima
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
    Plant J 51:617-30. 2007
    ..We conclude that OsNAC6 may serve as a useful biotechnological tool for the improvement of stress tolerance in various kinds of plants...
  34. doi request reprint Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays
    Masanori Okamoto
    RIKEN Plant Science Center, Yokohama, Kanagawa 230 0045, Japan
    Plant J 62:39-51. 2010
    ..Our results suggest that transcription in Arabidopsis seeds is more complex and dynamic than previously thought...
  35. pmc SPINDLY, a negative regulator of gibberellic acid signaling, is involved in the plant abiotic stress response
    Feng Qin
    Biological Resources and Post harvest Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
    Plant Physiol 157:1900-13. 2011
    ..Taken together, these data indicate that SPY plays a negative role in plant abiotic stress tolerance, probably by integrating environmental stress signals via GA and CK cross talk...
  36. ncbi request reprint Cell-free synthesis of zinc-binding proteins
    Takayoshi Matsuda
    Protein Research Group, RIKEN Genomic Sciences Center, 1 7 22 Suehiro cho, Tsurumi, Yokohama 230 0045, Japan
    J Struct Funct Genomics 7:93-100. 2006
    ..NMR analyses confirmed that correctly folded proteins were synthesized by the cell-free method. These results indicate that the cell-free method can be used to synthesize correctly folded and functional zinc-binding proteins...
  37. pmc Arabidopsis MALE STERILITY1 encodes a PHD-type transcription factor and regulates pollen and tapetum development
    Takuya Ito
    Antibiotics Laboratory, RIKEN, Tsukuba 305 0074, Japan
    Plant Cell 19:3549-62. 2007
    ..From these results, we discuss a role of MS1 in pollen and tapetum development and the conservation of MS1 function in flowering plants...
  38. ncbi request reprint Overexpression of LSH1, a member of an uncharacterised gene family, causes enhanced light regulation of seedling development
    Li Zhao
    Plant Function Exploration Team, Plant Functional Genomics Research Group, Genomic Sciences Center, RIKEN Yokohama Institute 1 7 22 Suyehirocho, Tsurumiku, Yokohama 230 0045, Kanagawa, Japan
    Plant J 37:694-706. 2004
    ..These results indicate that LSH1 is functionally dependent on phytochrome to mediate light regulation of seedling development...
  39. pmc Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling
    Hiroshi Abe
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, 1 1 Ohwashi, Tsukuba, Ibaraki 305 8686, Japan
    Plant Cell 15:63-78. 2003
    ..These results indicate that both AtMYC2 and AtMYB2 proteins function as transcriptional activators in ABA-inducible gene expression under drought stress in plants...
  40. ncbi request reprint A single amino acid insertion in the WRKY domain of the Arabidopsis TIR-NBS-LRR-WRKY-type disease resistance protein SLH1 (sensitive to low humidity 1) causes activation of defense responses and hypersensitive cell death
    Yoshiteru Noutoshi
    Laboratory of Plant Molecular Biology, RIKEN Tsukuba Institute, Koyadai 3 1 1, Tsukuba, Ibaraki 305 0074, Japan
    Plant J 43:873-88. 2005
    ....
  41. ncbi request reprint Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems
    Kyonoshin Maruyama
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, 1 1 Ohwashi, Tsukuba, Ibaraki 305 8686, Japan
    Plant J 38:982-93. 2004
    ..The recombinant DREB1A protein bound to A/GCCGACNT more efficiently than to A/GCCGACNA/G/C...
  42. pmc Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili
    Norihiro Futamura
    Department of Molecular and Cell Biology, Forestry and Forest Products Research Institute, Tsukuba, Ibaraki 305 8687, Japan
    BMC Genomics 9:383. 2008
    ..japonica should help us to clarify the overall expression of genes during the process of pollen development, we constructed a full-length enriched cDNA library that was derived from male strobili at various developmental stages...
  43. ncbi request reprint A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway
    Miki Fujita
    Laboratory of Plant Molecular Biology, RIKEN Tsukuba Institute, 3 1 1 Koyadai, Tsukuba, Ibaraki 305 0074, Japan
    Plant J 39:863-76. 2004
    ..Furthermore, RD26 activated a promoter of its target gene in Arabidopsis protoplasts. These results indicate that RD26 functions as a transcriptional activator in ABA-inducible gene expression under abiotic stress in plants...
  44. pmc Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library
    Taishi Umezawa
    Gene Discovery Research Team, RIKEN Plant Science Center, Koyadai 3 1 1, Tsukuba, Ibaraki 305 0074, Japan
    DNA Res 15:333-46. 2008
    ..A large set of soybean full-length cDNA clones reported in this study will serve as a useful resource for gene discovery from soybean and will also aid a precise annotation of the soybean genome...
  45. ncbi request reprint Regulation and functional analysis of ZmDREB2A in response to drought and heat stresses in Zea mays L
    Feng Qin
    Biological Resources Division, Japan International Research Center for Agricultural Sciences JIRCAS, 1 1 Ohwashi, Tsukuba, Ibaraki 305 8686, Japan
    Plant J 50:54-69. 2007
    ..Furthermore, overexpression of ZmDREB2A also enhanced thermotolerance in transgenic plants, implying that ZmDREB2A may play a dual functional role in mediating the expression of genes responsive to both water stress and heat stress...
  46. pmc Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions
    Hideki Sakamoto
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
    Plant Physiol 136:2734-46. 2004
    ..These results suggest that AZF2 and STZ function as transcriptional repressors to increase stress tolerance following growth retardation...
  47. ncbi request reprint Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
    Motoaki Seki
    Plant Mutation Exploration Team, Plant Functional Genomics Research Group, RIKEN Genomic Sciences Center, 3 1 1 Koyadai, Tsukuba 305 0074, Japan
    Plant J 31:279-92. 2002
    ....
  48. pmc OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes
    Asad Jan
    Biological Resources and Post harvest Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
    Plant Physiol 161:1202-16. 2013
    ..OsTZF1 may serve as a useful biotechnological tool for the improvement of stress tolerance in various plants through the control of RNA metabolism of stress-responsive genes...
  49. ncbi request reprint A combination of the Arabidopsis DREB1A gene and stress-inducible rd29A promoter improved drought- and low-temperature stress tolerance in tobacco by gene transfer
    Mie Kasuga
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, 1 1 Ohwashi, Tsukuba, Ibaraki, 305 8686 Japan
    Plant Cell Physiol 45:346-50. 2004
    ..These results indicate that a combination of the rd29A promoter and DREB1A is useful for improvement of various kinds of transgenic plants that are tolerant to environmental stress...
  50. pmc Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis
    Yukio Kurihara
    Plant Genomic Network Research Team, RIKEN Plant Science Center, Yokohama, Kanagawa 230 0045, Japan
    Proc Natl Acad Sci U S A 106:2453-8. 2009
    ..This finding demonstrates that one of the most important roles of NMD is the genome-wide suppression of the aberrant mlncRNAs including nat-RNAs...
  51. pmc Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana
    Hisataka Numa
    Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Japan
    EMBO J 29:352-62. 2010
    ..The reduction of H3K9me2 is not observed in regions flanking the tandem repeats. The results suggest that MOM1 transduces RdDM signals to repressive histone modification in the core region of RdDM...
  52. pmc Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray
    Teruaki Taji
    Laboratory of Plant Molecular Biology, RIKEN Tsukuba Institute, Tsukuba, Ibaraki 305 0074, Japan
    Plant Physiol 135:1697-709. 2004
    ..Stress tolerance of salt cress may be due to constitutive overexpression of many genes that function in stress tolerance and that are stress inducible in Arabidopsis...
  53. ncbi request reprint Arabidopsis Rad51B is important for double-strand DNA breaks repair in somatic cells
    Keishi Osakabe
    Department of Plant Biotechnology, National Institute of Agrobiological Sciences, 2 1 2 Kannondai, Tsukuba, Ibaraki, 305 8602, Japan
    Plant Mol Biol 57:819-33. 2005
    ..The mutants were moderately sensitive to gamma-ray and hypersensitive to cisplatin. Our results suggest that AtRAD51B gene product is involved in the repair of double-strand DNA breaks (DSBs) via HR...
  54. doi request reprint The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis
    Fumiyoshi Myouga
    RIKEN Plant Science Center, Yokohama, Kanagawa 230 0045, Japan
    Plant J 61:529-42. 2010
    ..psc.riken.jp/chloroplast/. The homozygous lines generated in this project are also available from the various Arabidopsis stock centers. We have donated the insertion homozygotes to their originating seed stock centers...
  55. ncbi request reprint RIKEN Arabidopsis full-length (RAFL) cDNA and its applications for expression profiling under abiotic stress conditions
    Motoaki Seki
    Plant Mutation Exploration Team, Plant Functional Genomics Research Group, RIKEN Genomic Sciences Center GSC, RIKEN Yokohama Institute, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama 230 0045, Japan
    J Exp Bot 55:213-23. 2004
    ..In this review, recent progress on transcriptome analysis using the RAFL cDNA microarray is highlighted...
  56. ncbi request reprint Characterization of full-length enriched expressed sequence tags of stress-treated poplar leaves
    Tokihiko Nanjo
    Department of Molecular and Cell Biology, Forestry and Forest Products Research Institute, Tsukuba, Ibaraki, 305 8687 Japan
    Plant Cell Physiol 45:1738-48. 2004
    ..We report here the first collection of full-length enriched stress-related ESTs of poplar and discuss environmental stress responses of forest trees in the light of comparative genomics...
  57. ncbi request reprint Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice
    Yusuke Ito
    Biological Resources Division, Japan International Research Center for Agricultural Sciences JIRCAS, Tsukuba, Ibaraki
    Plant Cell Physiol 47:141-53. 2006
    ....
  58. pmc Natural variation in a polyamine transporter determines paraquat tolerance in Arabidopsis
    Miki Fujita
    Gene Discovery Research Group, RIKEN Plant Science Center, Tsukuba, Ibaraki 305 0074, Japan
    Proc Natl Acad Sci U S A 109:6343-7. 2012
    ..Our identification of a molecular entity for PA/PQ uptake and sensitivity provides an important clue for our understanding of the mechanism and biological significance of PA uptake...
  59. ncbi request reprint Analysis of ABA hypersensitive germination2 revealed the pivotal functions of PARN in stress response in Arabidopsis
    Noriyuki Nishimura
    Graduate School of Integrated Science, Yokohama City University, 1 7 29 Suehiro, Tsurumi, Yokohama 230 0045, Japan
    Plant J 44:972-84. 2005
    ..These results suggest that both upregulation and downregulation of gene expression by the mRNA-destabilizing activity of AtPARN are crucial for proper ABA, salicylic acid and stress responses...
  60. pmc Identification and expression analysis of cytokinin metabolic genes in soybean under normal and drought conditions in relation to cytokinin levels
    Dung Tien Le
    Signaling Pathway Research Unit, RIKEN Plant Science Center, Yokohama, Kanagawa, Japan
    PLoS ONE 7:e42411. 2012
    ....
  61. pmc A heterocomplex of iron superoxide dismutases defends chloroplast nucleoids against oxidative stress and is essential for chloroplast development in Arabidopsis
    Fumiyoshi Myouga
    Gene Discovery Research Group, RIKEN Plant Science Center, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Plant Cell 20:3148-62. 2008
    ..We propose that heteromeric FSD2 and FSD3 act as ROS scavengers in the maintenance of early chloroplast development by protecting the chloroplast nucleoids from ROS...
  62. doi request reprint Two closely related subclass II SnRK2 protein kinases cooperatively regulate drought-inducible gene expression
    Masahide Mizoguchi
    RIKEN Plant Science Center, 3 1 1, Kouyadai, Tsukuba, Ibaraki, 305 0074 Japan
    Plant Cell Physiol 51:842-7. 2010
    ..This study indicates that subclass II SnRK2s also play important roles in drought stress signaling in Arabidopsis...
  63. ncbi request reprint Generation of chimeric repressors that confer salt tolerance in Arabidopsis and rice
    Tomomi Mito
    GreenSogna, Inc, Tsukuba, Japan
    Plant Biotechnol J 9:736-46. 2011
    ..Expression of a chimeric repressor provides an effective strategy for enhancing tolerance of plants to abiotic stress...
  64. doi request reprint Arabidopsis mutants of AtABCG22, an ABC transporter gene, increase water transpiration and drought susceptibility
    Takashi Kuromori
    Gene Discovery Research Group, RIKEN Plant Science Center, 1 7 22 Suehiro, Tsurumi ku, Yokohama 230 0045, Japan
    Plant J 67:885-94. 2011
    ..Also, the atabcg22 mutation enhanced the phenotype of nced3 mutants, which were defective in ABA biosynthesis. Accordingly, the additive roles of AtABCG22 functions in ABA signalling and ABA biosynthesis are discussed...
  65. ncbi request reprint A novel subgroup of bZIP proteins functions as transcriptional activators in hypoosmolarity-responsive expression of the ProDH gene in Arabidopsis
    Rie Satoh
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, 1 1 Ohwashi, Tsukuba, Ibaraki, 305 8686 Japan
    Plant Cell Physiol 45:309-17. 2004
    ..Moreover, we showed that the sGFP::AtbZIP11/ATB2 fusion protein is localized in the nucleus. These results suggest that the ATB2 subgroup functions as a transcriptional activator for hypoosmolarity-inducible ProDH in Arabidopsis:..
  66. doi request reprint Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics
    Kaoru Urano
    Gene Discovery Research Group, RIKEN Plant Science Center, 3 1 1 Koyadai, Tsukuba, Ibaraki, Japan
    Plant J 57:1065-78. 2009
    ..This metabolomics analysis revealed new molecular mechanisms of dynamic metabolic networks in response to dehydration stress...
  67. pmc Abscisic acid-dependent multisite phosphorylation regulates the activity of a transcription activator AREB1
    Takashi Furihata
    Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
    Proc Natl Acad Sci U S A 103:1988-93. 2006
    ..These results indicate that the ABA-dependent multisite phosphorylation of AREB1 regulates its own activation in plants...
  68. doi request reprint ABA hypersensitive germination2-1 causes the activation of both abscisic acid and salicylic acid responses in Arabidopsis
    Noriyuki Nishimura
    Graduate School of Art and Science, Yokohama City University, 1 7 29 Suehiro, Tsurumi, Yokohama, 230 0045, Japan
    Plant Cell Physiol 50:2112-22. 2009
    ..Our data suggest that a partial loss of PARN activity affects ABA, SA and mitochondrial function independently, and that the regulation of mRNA levels is deeply implicated in diverse cellular functions...
  69. pmc Differential gene expression in soybean leaf tissues at late developmental stages under drought stress revealed by genome-wide transcriptome analysis
    Dung Tien Le
    Signaling Pathway Research Unit, RIKEN Plant Science Center, Yokohama, Kanagawa, Japan
    PLoS ONE 7:e49522. 2012
    ..This study has identified excellent drought-responsive candidate genes for in-depth characterization and future development of improved drought-tolerant transgenic soybeans...
  70. ncbi request reprint Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses
    Yoshihiro Narusaka
    Biological Resources Division, Japan International Research Center for Agricultural Sciences JIRCAS, 1 1 Ohwashi, Tsukuba, Ibaraki 305 8686, Japan
    Plant J 34:137-48. 2003
    ..These results indicate that DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A gene in response to ABA in Arabidopsis...
  71. doi request reprint Arabidopsis tiling array analysis to identify the stress-responsive genes
    Akihiro Matsui
    Plant Genomic Network Research Team, Plant Functional Genomics Research Group, RIKEN Plant Science Center, Yokohama, Japan
    Methods Mol Biol 639:141-55. 2010
    ....
  72. doi request reprint Transcriptome analyses revealed diverse expression changes in ago1 and hyl1 Arabidopsis mutants
    Yukio Kurihara
    Plant Genomic Network Research Team, Plant Functional Genomics Research Group, RIKEN Plant Science Center, Yokohama, Kanagawa, Japan
    Plant Cell Physiol 50:1715-20. 2009
    ..The data in this paper are valuable for understanding the relationship between the miRNA pathway and its effect on transcriptomes...
  73. pmc Transcriptome analyses of a salt-tolerant cytokinin-deficient mutant reveal differential regulation of salt stress response by cytokinin deficiency
    Rie Nishiyama
    Signaling Pathway Research Unit, RIKEN Plant Science Center, Yokohama, Kanagawa, Japan
    PLoS ONE 7:e32124. 2012
    ..This study highlights the impact of CK regulation on the well-known stress-responsive signaling pathways, which regulate plant adaptation to high salinity as well as other environmental stresses...
  74. pmc Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1
    Taiko Kim To
    Plant Genomic Network Research Team, RIKEN Plant Science Center, Yokohama, Kanagawa, Japan
    PLoS Genet 7:e1002055. 2011
    ..We propose that HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1, possibly recruiting MET1 to specific loci, thus forming the foundation of silent chromatin structure for subsequent non-CG methylation...
  75. doi request reprint Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana
    Jong Myong Kim
    Plant Functional Genomics Research Group, RIKEN Plant Science Center, Tsurumi ku, Yokohama, Kanagawa, 230 0045 Japan
    Plant Cell Physiol 49:1580-8. 2008
    ....
  76. ncbi request reprint RARTF: database and tools for complete sets of Arabidopsis transcription factors
    Kei Iida
    Plant Mutation Exploration Team, Plant Functional Genomics Research Group, RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, Suehiro cho, Tsurumi ku, Yokohama, Japan
    DNA Res 12:247-56. 2005
    ..We will report expression profiles of all transcription factor genes in various plant tissues under various stress and hormone conditions in the near future...
  77. pmc Phenome analysis in plant species using loss-of-function and gain-of-function mutants
    Takashi Kuromori
    Gene Discovery Research Group, RIKEN Plant Science Center, Yokohama, Kanagawa, Japan
    Plant Cell Physiol 50:1215-31. 2009
    ..In this review, the present status of mutant resources for large-scale studies of gene function in plant research and the current perspective on using loss-of-function and gain-of-function mutants in phenome research will be discussed...
  78. doi request reprint Arabidopsis HDA6 is required for freezing tolerance
    Taiko Kim To
    Plant Genomic Network Research Team, RIKEN Plant Science Center, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Biochem Biophys Res Commun 406:414-9. 2011
    ..We conclude that HDA6 plays a critical role in regulating cold acclimation process that confers freezing resistance on Arabidopsis...
  79. pmc Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean
    Keiichi Mochida
    RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    DNA Res 17:303-24. 2010
    ..In addition, we provide a new resource for studying the conservation and divergence among the TCSs within plant species and/or between plants and other organisms...
  80. doi request reprint Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array
    Akihiro Matsui
    Plant Genomic Network Research Team, Plant Functional Genomics Research Group, RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa, 230 0045 Japan
    Plant Cell Physiol 49:1135-49. 2008
    ....
  81. ncbi request reprint CYP707A3, a major ABA 8'-hydroxylase involved in dehydration and rehydration response in Arabidopsis thaliana
    Taishi Umezawa
    Gene Discovery Research Group, RIKEN Plant Science Center, Yokohama, Kanagawa 230 0045, Japan
    Plant J 46:171-82. 2006
    ..Taken together, our results indicate that CYP707A3 plays an important role in determining threshold levels of ABA during dehydration and after rehydration...
  82. pmc Arabidopsis AHP2, AHP3, and AHP5 histidine phosphotransfer proteins function as redundant negative regulators of drought stress response
    Rie Nishiyama
    Signaling Pathway Research Unit, RIKEN Plant Science Center, Yokohama, 230 0045, Japan
    Proc Natl Acad Sci U S A 110:4840-5. 2013
    ..The knowledge gained from this study also has broad potential for biotechnological applications to increase abiotic stress tolerance in plants...
  83. doi request reprint Origin and evolution of genes related to ABA metabolism and its signaling pathways
    Kousuke Hanada
    Gene Discovery Research Group, RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    J Plant Res 124:455-65. 2011
    ..Taken together, these results suggest that expansion of the gene families related to ABA signaling pathways may have contributed to the sophisticated stress tolerance mechanisms of higher land plants...
  84. ncbi request reprint Expression and interaction analysis of Arabidopsis Skp1-related genes
    Naoki Takahashi
    Plant Function Exploration Team, Plant Functional Genomics Research Group, Genomic Sciences Center, RIKEN Yokohama Institute, 1 7 22 Suyehiro cho, Tsurumi ku, Yokohama, Kanagawa, 230 0045 Japan
    Plant Cell Physiol 45:83-91. 2004
    ..Both histochemical and RT-PCR analysis of eight ASK genes expression revealed unique expression patterns for the respective genes...
  85. doi request reprint The Chloroplast Function Database II: a comprehensive collection of homozygous mutants and their phenotypic/genotypic traits for nuclear-encoded chloroplast proteins
    Fumiyoshi Myouga
    RIKEN Plant Science Center, Yokohama, Kanagawa, Japan
    Plant Cell Physiol 54:e2. 2013
    ..It can be freely accessed at http://rarge.psc.riken.jp/chloroplast/...
  86. pmc PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation
    Tetsuya Sakurai
    RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Japan
    Plant Cell Physiol 54:e5. 2013
    ..PRIMeLink offers a bi-directional searchable function, from the gene and the metabolite perspective, to search for targets seamlessly and effectively...
  87. pmc Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop
    Yoshinori Utsumi
    Plant Genomic Network Research Team, RIKEN Plant Science Center, Tsurumi ku, Yokohama, Kanagawa, Japan
    DNA Res 19:335-45. 2012
    ..These results demonstrate that our microarray is a useful tool for analysing the cassava transcriptome and that it is applicable for various cassava genotypes...
  88. pmc Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana
    Keiko Yonekura-Sakakibara
    RIKEN Plant Science Center, 1 7 22, Suehiro cho, Tsurumi ku, Yokohama 230 0045, Japan
    Plant J 69:154-67. 2012
    ..These data suggest major routes from cyanidin 3-O-glucoside to the most highly modified cyanidin in the potential intricate anthocyanin modification pathways in Arabidopsis...
  89. pmc Analysis of cytokinin mutants and regulation of cytokinin metabolic genes reveals important regulatory roles of cytokinins in drought, salt and abscisic acid responses, and abscisic acid biosynthesis
    Rie Nishiyama
    RIKEN Plant Science Center, Yokohama, Kanagawa 230 0045, Japan
    Plant Cell 23:2169-83. 2011
    ....
  90. pmc In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants
    Keiichi Mochida
    RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    DNA Res 18:321-32. 2011
    ....
  91. pmc TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics
    Keiichi Mochida
    RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    DNA Res 20:151-62. 2013
    ....
  92. doi request reprint Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources
    Masami Yokota Hirai
    RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    J Plant Res 123:291-8. 2010
    ..In this paper, we release approximately 3,000 metabolic profiles obtained by targeted analysis for 36 metabolites and discuss the possible regulation of amino acid accumulation...
  93. ncbi request reprint PRIMe: a Web site that assembles tools for metabolomics and transcriptomics
    Kenji Akiyama
    RIKEN Plant Science Center, Yokohama, Kanagawa, Japan
    In Silico Biol 8:339-45. 2008
    ....
  94. pmc Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences
    Kei Iida
    Plant Mutation Exploration Team, Plant Functional Genomics Research Group, RIKEN Genomic Sciences Center GSC, RIKEN Yokohama Institute, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama 230 0045, Japan
    Nucleic Acids Res 32:5096-103. 2004
    ..In particular, cold-stress conditions affected alternative splicing profiles. The change in alternative splicing profiles under cold stress may be mediated by alternative splicing and transcriptional regulation of splicing factors...
  95. doi request reprint Potential utilization of NAC transcription factors to enhance abiotic stress tolerance in plants by biotechnological approach
    Lam Son Phan Tran
    RIKEN Plant Science Center, Signaling Pathway Research Unit, Suehiro cho, Tsurumi, Yokohama, Kanagawa, Japan
    GM Crops 1:32-9. 2010
    ..In this review the NAC TF family will be described and the potential use of NAC TFs in development of improved stress tolerant transgenic crops will be discussed...
  96. pmc Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads
    Shuji Kawaguchi
    Bioinformatics and Systems Engineering Division, RIKEN Yokohama Institute, Tsurumi, Yokohama, Kanagawa 230 0045, Japan
    Bioinformatics 28:929-37. 2012
    ..However, problems of high-level noises and biases still remain and interrupt the reconstruction. A method is required that is robust against noise and bias and correctly reconstructs transcripts regardless of equipment used...
  97. pmc In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean
    Keiichi Mochida
    RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    DNA Res 16:353-69. 2009
    ..This study provides a basic framework and an important user-friendly public information resource which enables analyses of transcriptional regulation in soybean...
  98. pmc Increased expression and protein divergence in duplicate genes is associated with morphological diversification
    Kousuke Hanada
    Gene Discovery Research Group, RIKEN Plant Science Center, Yokohama, Kanagawa, Japan
    PLoS Genet 5:e1000781. 2009
    ..thaliana had not experienced expression or protein divergence that resulted in morphological diversification. These results indicate that most duplicate genes have experienced minor functionalization...
  99. ncbi request reprint An Arabidopsis chloroplast-targeted Hsp101 homologue, APG6, has an essential role in chloroplast development as well as heat-stress response
    Fumiyoshi Myouga
    Plant Functional Genomics Group, RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Plant J 48:249-60. 2006
    ..The APG6 protein is not only involved in heat-stress response in chloroplasts, but is also essential for chloroplast development...
  100. ncbi request reprint A collection of 11 800 single-copy Ds transposon insertion lines in Arabidopsis
    Takashi Kuromori
    Plant Mutation Exploration Team, Plant Functional Genomics Research Group, RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama 230 0045, Japan
    Plant J 37:897-905. 2004
    ..gsc.riken.go.jp/) and are depositing these lines in the RIKEN BioResource Center as available resources (http://www.brc.riken.go.jp/Eng/)...
  101. doi request reprint sORF finder: a program package to identify small open reading frames with high coding potential
    Kousuke Hanada
    Plant Science Center, RIKEN, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Kanagawa 230 0045, Japan
    Bioinformatics 26:399-400. 2010
    ....