Charles Plessy

Summary

Affiliation: RIKEN Brain Science Institute
Country: Japan

Publications

  1. ncbi request reprint Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules
    Alice Grison
    SISSA, Area of Neuroscience, via Bonomea 265, 34136 Trieste, Italy
    BMC Genomics 15:729. 2014
  2. pmc Population transcriptomics with single-cell resolution: a new field made possible by microfluidics: a technology for high throughput transcript counting and data-driven definition of cell types
    Charles Plessy
    RIKEN Omics Science Center, Suehiro cho, Tsurumi ku, Yokohama, Japan
    Bioessays 35:131-40. 2013
  3. pmc Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
    Charles Plessy
    RIKEN Yokohama Institute, Omics Science Center, Yokohama, Japan
    Nat Methods 7:528-34. 2010
  4. pmc Promoter architecture of mouse olfactory receptor genes
    Charles Plessy
    RIKEN Yokohama Institute, Omics Science Center, Yokohama, Kanagawa, Japan
    Genome Res 22:486-97. 2012
  5. pmc Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching
    Dave T P Tang
    Omics Science Center, RIKEN Yokohama Institute, 1 7 22 Suehiro cho, Yokohama, Kanagawa 230 0045, Japan
    Nucleic Acids Res 41:e44. 2013
  6. pmc Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation
    Matthias Harbers
    RIKEN Center for Life Science Technologies, Division of Genomics Technologies, Yokohama, Kanagawa 230 0045, Japan
    BMC Genomics 14:665. 2013
  7. pmc NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes
    Md Salimullah
    RIKEN Yokohama Institute, Omics Science Center, Yokohama City, Kanagawa, 230 0045, Japan
    Cold Spring Harb Protoc 2011:pdb.prot5559. 2011
  8. ncbi request reprint Tunable fractionation of nucleic acids
    Md Salimullah
    Functional Genomics Technology Team, Omics Science Center OSC, RIKEN Yokohama Institute, Kanagawa, Japan
    Biotechniques 47:1041-3. 2009
  9. ncbi request reprint High-throughput verification of transcriptional starting sites by Deep-RACE
    Signe Olivarius
    Functional Genomics Technology Team, Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan
    Biotechniques 46:130-2. 2009
  10. pmc A resource for transcriptomic analysis in the mouse brain
    Charles Plessy
    Functional Genomics Technology Team, Omics Science Center, RIKEN Yokohama Institute, Yokohama, Kanagawa, Japan
    PLoS ONE 3:e3012. 2008

Detail Information

Publications11

  1. ncbi request reprint Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules
    Alice Grison
    SISSA, Area of Neuroscience, via Bonomea 265, 34136 Trieste, Italy
    BMC Genomics 15:729. 2014
    ..The molecular basis that underlies selective vulnerability of A9 and A10 neurons is presently unknown...
  2. pmc Population transcriptomics with single-cell resolution: a new field made possible by microfluidics: a technology for high throughput transcript counting and data-driven definition of cell types
    Charles Plessy
    RIKEN Omics Science Center, Suehiro cho, Tsurumi ku, Yokohama, Japan
    Bioessays 35:131-40. 2013
    ....
  3. pmc Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
    Charles Plessy
    RIKEN Yokohama Institute, Omics Science Center, Yokohama, Japan
    Nat Methods 7:528-34. 2010
    ..Both of these methods allow further annotation-agnostic studies of the complex human transcriptome...
  4. pmc Promoter architecture of mouse olfactory receptor genes
    Charles Plessy
    RIKEN Yokohama Institute, Omics Science Center, Yokohama, Kanagawa, Japan
    Genome Res 22:486-97. 2012
    ..Finally, we showed that a short genomic fragment flanking the major TSS of the OR gene Olfr160 (M72) can drive OSN-specific expression in transgenic mice...
  5. pmc Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching
    Dave T P Tang
    Omics Science Center, RIKEN Yokohama Institute, 1 7 22 Suehiro cho, Yokohama, Kanagawa 230 0045, Japan
    Nucleic Acids Res 41:e44. 2013
    ..We describe a strategy that eliminates these artifacts in silico and propose an experimental solution that suppresses biases from TS...
  6. pmc Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation
    Matthias Harbers
    RIKEN Center for Life Science Technologies, Division of Genomics Technologies, Yokohama, Kanagawa 230 0045, Japan
    BMC Genomics 14:665. 2013
    ..Adding template-switching oligonucleotides to reverse transcription reactions is the most commonly used approach when working with very small quantities of RNA even from single cells...
  7. pmc NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes
    Md Salimullah
    RIKEN Yokohama Institute, Omics Science Center, Yokohama City, Kanagawa, 230 0045, Japan
    Cold Spring Harb Protoc 2011:pdb.prot5559. 2011
    ..The libraries can be sequenced using an Illumina sequencer Genome Analyzer IIX [corrected] with a level of sensitivity 1000 times higher than CAGE...
  8. ncbi request reprint Tunable fractionation of nucleic acids
    Md Salimullah
    Functional Genomics Technology Team, Omics Science Center OSC, RIKEN Yokohama Institute, Kanagawa, Japan
    Biotechniques 47:1041-3. 2009
    ..This method could also be applied to the fractionation of nucleic acids generated by other types of reactions...
  9. ncbi request reprint High-throughput verification of transcriptional starting sites by Deep-RACE
    Signe Olivarius
    Functional Genomics Technology Team, Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan
    Biotechniques 46:130-2. 2009
    ..In comparison to the sequencing of RACE PCR products, our approach is more precise and more cost-effective even for batches as small as 17...
  10. pmc A resource for transcriptomic analysis in the mouse brain
    Charles Plessy
    Functional Genomics Technology Team, Omics Science Center, RIKEN Yokohama Institute, Yokohama, Kanagawa, Japan
    PLoS ONE 3:e3012. 2008
    ..Studies of sorted cells expressing the same transgene have shown that cell populations can be distinguished according to their transcriptional profile...
  11. ncbi request reprint The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
    Harukazu Suzuki
    RIKEN Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan
    Nat Genet 41:553-62. 2009
    ....