Shin Ya Miyagishima

Summary

Affiliation: RIKEN Brain Science Institute
Country: Japan

Publications

  1. doi request reprint Chloroplast division: squeezing the photosynthetic captive
    Shin Ya Miyagishima
    Initiative Research Program, Advanced Science Institute, RIKEN, 2 1 Hirosawa, Wako, Saitama 351 0198, Japan
    Curr Opin Microbiol 13:738-46. 2010
  2. pmc Evolutionary linkage between eukaryotic cytokinesis and chloroplast division by dynamin proteins
    Shin Ya Miyagishima
    Initiative Research Program, Advanced Science Institute, RIKEN, 2 1 Hirosawa, Wako, Saitama 351 0198, Japan
    Proc Natl Acad Sci U S A 105:15202-7. 2008
  3. pmc The YlmG protein has a conserved function related to the distribution of nucleoids in chloroplasts and cyanobacteria
    Yukihiro Kabeya
    Initiative Research Program, RIKEN Advanced Science Institute, Wako, Saitama, Japan
    BMC Plant Biol 10:57. 2010
  4. pmc Plastid chaperonin proteins Cpn60 alpha and Cpn60 beta are required for plastid division in Arabidopsis thaliana
    Kenji Suzuki
    Initiative Research Program, Advanced Science Institute, RIKEN, 2 1 Hirosawa, Wako, Saitama 351 0198, Japan
    BMC Plant Biol 9:38. 2009
  5. doi request reprint Eukaryotic and eubacterial contributions to the establishment of plastid proteome estimated by large-scale phylogenetic analyses
    Kenji Suzuki
    Initiative Research Program, Advanced Science Institute, RIKEN, Wako, Saitama, Japan
    Mol Biol Evol 27:581-90. 2010
  6. doi request reprint Plant-specific protein MCD1 determines the site of chloroplast division in concert with bacteria-derived MinD
    Hiromitsu Nakanishi
    Initiative Research Program, Advanced Science Institute, RIKEN, Wako, Saitama 351 0198, Japan
    Curr Biol 19:151-6. 2009
  7. pmc The PLASTID DIVISION1 and 2 components of the chloroplast division machinery determine the rate of chloroplast division in land plant cell differentiation
    Kumiko Okazaki
    Initiative Research Program, Advanced Science Institute, RIKEN, Wako, Saitama 351 0198, Japan
    Plant Cell 21:1769-80. 2009
  8. pmc The functional domain of GCS1-based gamete fusion resides in the amino terminus in plant and parasite species
    Toshiyuki Mori
    Miyagishima Initiative Research Unit, Advanced Science Institute, RIKEN, Saitama, Japan
    PLoS ONE 5:e15957. 2010
  9. pmc Nucleus-independent control of the rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae
    Ayumi Minoda
    Initiative Research Program, Advanced Science Institute, RIKEN, Wako, Saitama, Japan
    Plant Physiol 154:1532-40. 2010
  10. pmc The evolution of the regulatory mechanism of chloroplast division
    Kumiko Okazaki
    Initiative Research Program, Advanced Science Institute, RIKEN, Wako, Saitama, Japan
    Plant Signal Behav 5:164-7. 2010

Collaborators

Detail Information

Publications26

  1. doi request reprint Chloroplast division: squeezing the photosynthetic captive
    Shin Ya Miyagishima
    Initiative Research Program, Advanced Science Institute, RIKEN, 2 1 Hirosawa, Wako, Saitama 351 0198, Japan
    Curr Opin Microbiol 13:738-46. 2010
    ..On the basis of the information about the division complex, we are beginning to understand how the division complex evolved, and how eukaryotic host cells regulate chloroplast division during proliferation and differentiation...
  2. pmc Evolutionary linkage between eukaryotic cytokinesis and chloroplast division by dynamin proteins
    Shin Ya Miyagishima
    Initiative Research Program, Advanced Science Institute, RIKEN, 2 1 Hirosawa, Wako, Saitama 351 0198, Japan
    Proc Natl Acad Sci U S A 105:15202-7. 2008
    ....
  3. pmc The YlmG protein has a conserved function related to the distribution of nucleoids in chloroplasts and cyanobacteria
    Yukihiro Kabeya
    Initiative Research Program, RIKEN Advanced Science Institute, Wako, Saitama, Japan
    BMC Plant Biol 10:57. 2010
    ..Although several components of the envelope division machinery have been identified and characterized, little is known about the molecular components/mechanisms underlying the change of the nucleoid structure...
  4. pmc Plastid chaperonin proteins Cpn60 alpha and Cpn60 beta are required for plastid division in Arabidopsis thaliana
    Kenji Suzuki
    Initiative Research Program, Advanced Science Institute, RIKEN, 2 1 Hirosawa, Wako, Saitama 351 0198, Japan
    BMC Plant Biol 9:38. 2009
    ..To further identify new proteins that are required for plastid division, we characterized previously and newly isolated plastid division mutants of Arabidopsis thaliana...
  5. doi request reprint Eukaryotic and eubacterial contributions to the establishment of plastid proteome estimated by large-scale phylogenetic analyses
    Kenji Suzuki
    Initiative Research Program, Advanced Science Institute, RIKEN, Wako, Saitama, Japan
    Mol Biol Evol 27:581-90. 2010
    ..These results suggest that a considerable amount of bacterial metagenomic material, as well as the genomes of the host and the endosymbiont, has contributed to the establishment of the plastid before the split of the red and green algae...
  6. doi request reprint Plant-specific protein MCD1 determines the site of chloroplast division in concert with bacteria-derived MinD
    Hiromitsu Nakanishi
    Initiative Research Program, Advanced Science Institute, RIKEN, Wako, Saitama 351 0198, Japan
    Curr Biol 19:151-6. 2009
    ....
  7. pmc The PLASTID DIVISION1 and 2 components of the chloroplast division machinery determine the rate of chloroplast division in land plant cell differentiation
    Kumiko Okazaki
    Initiative Research Program, Advanced Science Institute, RIKEN, Wako, Saitama 351 0198, Japan
    Plant Cell 21:1769-80. 2009
    ..These results suggest that the integration of PDV proteins into the division machinery enabled land plant cells to change chloroplast size and number in accord with the fate of cell differentiation...
  8. pmc The functional domain of GCS1-based gamete fusion resides in the amino terminus in plant and parasite species
    Toshiyuki Mori
    Miyagishima Initiative Research Unit, Advanced Science Institute, RIKEN, Saitama, Japan
    PLoS ONE 5:e15957. 2010
    ..Those findings above indicate that the extracellular N-terminus alone is sufficient for GCS1-based gamete fusion...
  9. pmc Nucleus-independent control of the rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae
    Ayumi Minoda
    Initiative Research Program, Advanced Science Institute, RIKEN, Wako, Saitama, Japan
    Plant Physiol 154:1532-40. 2010
    ..The autonomous system would have been necessary for the initial fixation of cyanobacterial photosynthesis in the ancient nonphotosynthetic eukaryotic host. It has remained functional in the red algal chloroplast over evolutionary time...
  10. pmc The evolution of the regulatory mechanism of chloroplast division
    Kumiko Okazaki
    Initiative Research Program, Advanced Science Institute, RIKEN, Wako, Saitama, Japan
    Plant Signal Behav 5:164-7. 2010
    ..Thus, the integration of PDV proteins into the chloroplast division machinery enabled land plant cells to change chloroplast size and number in accord with the fate of cell differentiation...
  11. ncbi request reprint Chloroplast division
    Jonathan M Glynn
    Genetics Program, Michigan State University, East Lansing, MI 48824, USA
    Traffic 8:451-61. 2007
    ..In this review, we attempt to summarize the most recent developments in the field and assemble these observations into a working model of plastid division in plants...
  12. ncbi request reprint [Chloroplast division machinery and its evolution]
    Shin Ya Miyagishima
    Tanpakushitsu Kakusan Koso 50:1887-91. 2005
  13. ncbi request reprint Chloroplast division machinery as revealed by immunofluorescence and electron microscopy
    Haruko Kuroiwa
    Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo 113 0033, Japan
    Planta 215:185-90. 2002
    ..With the outer ring providing the motivating force, the FtsZ and inner PD rings ultimately decompose to their base components...
  14. pmc A plant-specific dynamin-related protein forms a ring at the chloroplast division site
    Shin Ya Miyagishima
    Department of Biological Sciences, Graduate School of Science, University of Tokyo, Hongo, Tokyo 113 0033, Japan
    Plant Cell 15:655-65. 2003
    ....
  15. pmc Cyanidioschyzon merolae genome. A tool for facilitating comparable studies on organelle biogenesis in photosynthetic eukaryotes
    Osami Misumi
    Laboratory of Cell Biology and Frontier Project Life s Adaptation Strategies of Environmental Changes, Department of Life Science, College of Science, Rikkyo University, Toshima, Tokyo 171 8501, Japan
    Plant Physiol 137:567-85. 2005
    ..These results reflect the increase in genome size, the acquisition of complicated cellular structures, and kinematic devices in C. reinhardtii...
  16. pmc Detection and localization of a chloroplast-encoded HU-like protein that organizes chloroplast nucleoids
    Tamaki Kobayashi
    Department of Biological Science, Graduate School of Science, University of Tokyo, Tokyo 113 0033, Japan
    Plant Cell 14:1579-89. 2002
    ..These results indicate that HC, a bacteria-derived histone-like protein, primarily organizes cpDNA into the nucleoid...
  17. pmc Dynamic recruitment of dynamin for final mitochondrial severance in a primitive red alga
    Keiji Nishida
    Department of Biological Sciences, Graduate School of Science, University of Tokyo, Hongo, Tokyo 113 0033, Japan
    Proc Natl Acad Sci U S A 100:2146-51. 2003
    ..It is thought that the FtsZ, MD, and dynamin rings are involved in scaffolding, constriction, and final separation, respectively. In eukaryotes, mitochondrial severance is probably the most conserved role for the dynamin family...
  18. ncbi request reprint Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae
    Niji Ohta
    Department of Molecular Biology, Faculty of Science, Saitama University, 255 Shimo ohkubo, Sakura, Saitama, Saitama 338 8570, Japan
    DNA Res 10:67-77. 2003
    ..Our phylogenetic results suggest that the Cyanidiophyceae, including C. merolae, are a basal clade within the red lineage plastids...
  19. ncbi request reprint The division of pleomorphic plastids with multiple FtsZ rings in tobacco BY-2 cells
    Yu Momoyama
    Department of Biological Sciences, Graduate School of Science, University of Tokyo, Hongo, Tokyo, Japan
    Eur J Cell Biol 82:323-32. 2003
    ..Based on these results, a novel model for the pleomorphic plastid division with multiple FtsZ rings is proposed...
  20. ncbi request reprint An evolutionary puzzle: chloroplast and mitochondrial division rings
    Shin Ya Miyagishima
    Department of Life Science, College of Science, Rikkyo St Paul s University, 3 34 1 Nishiikebukuro, Toshima ku, Tokyo 171 8501, Japan
    Trends Plant Sci 8:432-8. 2003
    ..These findings suggest that the division of chloroplasts and primitive mitochondria involve very similar systems, consisting of an amalgamation of rings from bacteria and eukaryotes...
  21. ncbi request reprint Two types of FtsZ proteins in mitochondria and red-lineage chloroplasts: the duplication of FtsZ is implicated in endosymbiosis
    Shin Ya Miyagishima
    Department of Life Sciences, College of Science, Rikkyo St Paul s University, 3 34 1 Nishiikebukuro, Toshima ku, Tokyo 171 8501, Japan
    J Mol Evol 58:291-303. 2004
    ....
  22. ncbi request reprint Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D
    Motomichi Matsuzaki
    Department of Biomedical Chemistry, Graduate School of Medicine, University of Tokyo, 7 3 1 Hongo, Bunkyo ku, Tokyo 113 0033, Japan
    Nature 428:653-7. 2004
    ..These results indicate that the C. merolae genome provides a model system with a simple gene composition for studying the origin, evolution and fundamental mechanisms of eukaryotic cells...
  23. doi request reprint Male fertility of malaria parasites is determined by GCS1, a plant-type reproduction factor
    Makoto Hirai
    Division of Medical Zoology, Department of Infection and Immunity, Jichi Medical University School of Medicine, Shimotsuke City, Tochigi 329 0498, Japan
    Curr Biol 18:607-13. 2008
    ..Our present findings provide a new viewpoint for understanding the parasitic fertilization system and important clues for novel strategies to attack life-threatening parasites...
  24. ncbi request reprint Effects of mutations in Arabidopsis FtsZ1 on plastid division, FtsZ ring formation and positioning, and FtsZ filament morphology in vivo
    David W Yoder
    Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA
    Plant Cell Physiol 48:775-91. 2007
    ..These alleles will facilitate understanding of how the in vitro biochemical properties of FtsZ1 are related to its in vivo function...
  25. ncbi request reprint Origin and evolution of the chloroplast division machinery
    Shin Ya Miyagishima
    Department of Plant Biology, Michigan State University, East Lansing, 48824, USA
    J Plant Res 118:295-306. 2005
    ..The principal features of the chloroplast division system thus far identified are conserved across several lineages, including those with secondary chloroplasts, and may reflect primeval features of mitochondrial division...
  26. pmc PDV1 and PDV2 mediate recruitment of the dynamin-related protein ARC5 to the plastid division site
    Shin Ya Miyagishima
    Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA
    Plant Cell 18:2517-30. 2006
    ....