Kuniya Abe

Summary

Affiliation: RIKEN Brain Science Institute
Country: Japan

Publications

  1. pmc High resolution intravital imaging of subcellular structures of mouse abdominal organs using a microstage device
    Liqin Cao
    Technology and Development Team for Mammalian Cellular Dynamics, RIKEN BioResource Center, Tsukuba, Ibaraki, Japan
    PLoS ONE 7:e33876. 2012
  2. pmc Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence-SNP analysis
    Kuniya Abe
    Technology and Development Team for Mammalian Cellular Dynamics, BioResource Center, RIKEN Tsukuba Institute, Tsukuba, Ibaraki 305 0074, Japan
    Genome Res 14:2439-47. 2004
  3. pmc Comprehensive expressional analyses of antisense transcripts in colon cancer tissues using artificial antisense probes
    Rintaro Saito
    Institute for Advanced Biosciences, Keio University, Tsuruoka 997 0017, Japan
    BMC Med Genomics 4:42. 2011
  4. pmc RNAi-mediated knockdown of Xist does not rescue the impaired development of female cloned mouse embryos
    Mami Oikawa
    RIKEN BioResource Center, Ibaraki 305 0074, Japan
    J Reprod Dev 59:231-7. 2013
  5. doi request reprint Genome-wide analysis of expression modes and DNA methylation status at sense-antisense transcript loci in mouse
    Yutaka Watanabe
    Technology and Development Team for Mammalian Cellular Dynamics, BioResource Center BRC, RIKEN Tsukuba Institute, Ibaraki 305 0074, Japan
    Genomics 96:333-41. 2010
  6. pmc Large, male germ cell-specific hypomethylated DNA domains with unique genomic and epigenomic features on the mouse X chromosome
    Rieko Ikeda
    1Technology and Development Team for Mammalian Genome Dynamics, RIKEN BioResource Center, 3 1 1 Koyadai, Tsukuba City, Ibaraki 305 0074, Japan
    DNA Res 20:549-65. 2013
  7. doi request reprint Generation of a novel germline stem cell line expressing a germline-specific reporter in the mouse
    Hirosuke Shiura
    Technology and Development Team for Mammalian Cellular Dynamics, RIKEN BioResource Center, Ibaraki, 305 0074, Japan
    Genesis 51:498-505. 2013
  8. pmc RNAi-mediated knockdown of Xist can rescue the impaired postimplantation development of cloned mouse embryos
    Shogo Matoba
    RIKEN BioResource Center, Tsukuba, Ibaraki 305 0074, Japan
    Proc Natl Acad Sci U S A 108:20621-6. 2011
  9. pmc A high-speed congenic strategy using first-wave male germ cells
    Narumi Ogonuki
    RIKEN BioResource Center, Tsukuba, Ibaraki, Japan
    PLoS ONE 4:e4943. 2009
  10. ncbi request reprint Genetic differences among C57BL/6 substrains
    Kazuyuki Mekada
    RIKEN BioResource Center, Tsukuba, Ibaraki, Japan
    Exp Anim 58:141-9. 2009

Collaborators

Detail Information

Publications26

  1. pmc High resolution intravital imaging of subcellular structures of mouse abdominal organs using a microstage device
    Liqin Cao
    Technology and Development Team for Mammalian Cellular Dynamics, RIKEN BioResource Center, Tsukuba, Ibaraki, Japan
    PLoS ONE 7:e33876. 2012
    ..The microstage approach adds an exciting new technique to the in vivo imaging toolbox...
  2. pmc Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence-SNP analysis
    Kuniya Abe
    Technology and Development Team for Mammalian Cellular Dynamics, BioResource Center, RIKEN Tsukuba Institute, Tsukuba, Ibaraki 305 0074, Japan
    Genome Res 14:2439-47. 2004
    ..2% of the genome showed an extremely low SNP rate (percentage identity = 0.9997); these sequences are likely derived from the molossinus genome...
  3. pmc Comprehensive expressional analyses of antisense transcripts in colon cancer tissues using artificial antisense probes
    Rintaro Saito
    Institute for Advanced Biosciences, Keio University, Tsuruoka 997 0017, Japan
    BMC Med Genomics 4:42. 2011
    ..However, the number of known sense-antisense pairs remains limited because currently available cDNA sequences represent only a fraction of the total number of transcripts comprising the transcriptome of each cell type...
  4. pmc RNAi-mediated knockdown of Xist does not rescue the impaired development of female cloned mouse embryos
    Mami Oikawa
    RIKEN BioResource Center, Ibaraki 305 0074, Japan
    J Reprod Dev 59:231-7. 2013
    ..This could only be achieved in female embryos by applying a gene knockout strategy rather than an siRNA approach. ..
  5. doi request reprint Genome-wide analysis of expression modes and DNA methylation status at sense-antisense transcript loci in mouse
    Yutaka Watanabe
    Technology and Development Team for Mammalian Cellular Dynamics, BioResource Center BRC, RIKEN Tsukuba Institute, Ibaraki 305 0074, Japan
    Genomics 96:333-41. 2010
    ..This cross-strand relationship is not a privilege of imprinted genes but seems to occur widely in SATs...
  6. pmc Large, male germ cell-specific hypomethylated DNA domains with unique genomic and epigenomic features on the mouse X chromosome
    Rieko Ikeda
    1Technology and Development Team for Mammalian Genome Dynamics, RIKEN BioResource Center, 3 1 1 Koyadai, Tsukuba City, Ibaraki 305 0074, Japan
    DNA Res 20:549-65. 2013
    ..It thus appears that such a unique epigenomic state associated with the LoDs may constitute a basis for the specific expression of genes contained in these genomic domains...
  7. doi request reprint Generation of a novel germline stem cell line expressing a germline-specific reporter in the mouse
    Hirosuke Shiura
    Technology and Development Team for Mammalian Cellular Dynamics, RIKEN BioResource Center, Ibaraki, 305 0074, Japan
    Genesis 51:498-505. 2013
    ..This Mvh-Venus GS cell line, to our knowledge, is the first one expressing a germ cell-specific reporter. This valuable resource should provide new opportunities for studies on male germ cell differentiation...
  8. pmc RNAi-mediated knockdown of Xist can rescue the impaired postimplantation development of cloned mouse embryos
    Shogo Matoba
    RIKEN BioResource Center, Tsukuba, Ibaraki 305 0074, Japan
    Proc Natl Acad Sci U S A 108:20621-6. 2011
    ..Furthermore, our strategy provides a promising breakthrough for mammalian SCNT cloning, because RNAi treatment of oocytes is readily applicable to most mammal species...
  9. pmc A high-speed congenic strategy using first-wave male germ cells
    Narumi Ogonuki
    RIKEN BioResource Center, Tsukuba, Ibaraki, Japan
    PLoS ONE 4:e4943. 2009
    ..Even with marker-assisted selection, the so-called 'speed congenic strategy', it takes more than a year at N4 or N5...
  10. ncbi request reprint Genetic differences among C57BL/6 substrains
    Kazuyuki Mekada
    RIKEN BioResource Center, Tsukuba, Ibaraki, Japan
    Exp Anim 58:141-9. 2009
    ..These data will be useful for accurate genetic monitoring of genetically engineered mice with the C57BL/6 background...
  11. doi request reprint Large-scale production of growing oocytes in vitro from neonatal mouse ovaries
    Arata Honda
    BioResource Center, RIKEN, Tsukuba, Ibaraki 305 0074, Japan
    Int J Dev Biol 53:605-13. 2009
    ..This culture system may provide a significant impetus to the development of new techniques for the efficient production of oocytes from fetal or neonatal ovaries, for research, clinical, and zoological purposes...
  12. doi request reprint Impeding Xist expression from the active X chromosome improves mouse somatic cell nuclear transfer
    Kimiko Inoue
    BioResource Center, RIKEN, 305 0024 Tsukuba, Japan
    Science 330:496-9. 2010
    ..Thus, we have identified nonrandom reprogramming errors in mouse cloning that can be altered to improve the efficiency of SCNT methods...
  13. ncbi request reprint The mouse resources at the RIKEN BioResource center
    Atsushi Yoshiki
    RIKEN BioResource Center, Tsukuba, Ibaraki, Japan
    Exp Anim 58:85-96. 2009
    ..RIKEN BRC collaborates with FIMRe members to support Japanese scientists in the use of valuable mouse resources from around the world...
  14. ncbi request reprint Molecular dynamics of heterochromatin protein 1beta, HP1beta, during mouse preimplantation development
    Taiga Yamazaki
    Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba Science City, Ibaraki, Japan
    J Reprod Dev 53:1035-41. 2007
    ..These results suggest that the chromatin configuration may be regulated by the stability and mobility of chromatin-associated proteins including HP1beta during early embryonic stages...
  15. doi request reprint Molecular identification of t(w5): Vps52 promotes pluripotential cell differentiation through cell-cell interactions
    Michihiko Sugimoto
    Technology and Development Team for Mammalian Cellular Dynamics, RIKEN BioResource Center, Tsukuba, Ibaraki 305 00074, Japan
    Cell Rep 2:1363-74. 2012
    ..It is also required in the formation of embryonic structures at a later stage of development, revealing hitherto unknown functions of Vps52 in the development of a multicellular organism...
  16. doi request reprint Differences and similarities in the developmental status of embryo-derived stem cells and primordial germ cells revealed by global expression profiling
    Nathan Mise
    Mammalian Cellular Dynamics, RIKEN BioResource Center, Tsukuba, Japan
    Genes Cells 13:863-77. 2008
    ..The relationships between PGCs and stem cells derived from embryos or germ cells are discussed in light of these findings...
  17. ncbi request reprint Dynamic changes in the epigenomic state and nuclear organization of differentiating mouse embryonic stem cells
    Satoru Kobayakawa
    Graduate School of Life and Environmental Sciences, University of Tsukuba, 1 1 1 Ten noudai, Tsukuba, Ibaraki 305 8572, Japan
    Genes Cells 12:447-60. 2007
    ..Thus, this experimental system should facilitate studies focusing on relationships between nuclear organization, epigenetic status and cell differentiation...
  18. pmc X chromosome reactivation initiates in nascent primordial germ cells in mice
    Michihiko Sugimoto
    Technology and Development Team for Mammalian Cellular Dynamics, BioResource Center, RIKEN Tsukuba Institute, Tsukuba, Ibaraki, Japan
    PLoS Genet 3:e116. 2007
    ..5 PGCs, indicating that X reactivation in developing PGCs occurs over a prolonged period. These results set the reactivation timing much earlier than previously thought and suggest that X reactivation may involve slow passive steps...
  19. pmc Highly parallel SNP genotyping reveals high-resolution landscape of mono-allelic Ube3a expression associated with locus-wide antisense transcription
    Koji Numata
    Technology and Development Team for Mammalian Cellular Dynamics, BioResource Center, RIKEN Tsukuba Institute, Ibaraki, 305 0074, Japan
    Nucleic Acids Res 39:2649-57. 2011
    ..The present study highlights the importance of locus-wide competition between sense and antisense transcripts...
  20. ncbi request reprint Efficient production of intersubspecific hybrid mice and embryonic stem cells by intracytoplasmic sperm injection
    Akie Shinmen
    RIKEN BioResource Center, Tsukuba, Ibaraki, Japan
    Mol Reprod Dev 74:1081-8. 2007
    ..Thus, ICSI using cryopreserved spermatozoa allows the efficient and immediate production of a number of F1 hybrid mice and ES cell lines, which can be used for polymorphic analysis of mouse genetics...
  21. ncbi request reprint Birth of mice produced by germ cell nuclear transfer
    Hiromi Miki
    RIKEN BioResource Center, Tsukuba, Ibaraki, Japan
    Genesis 41:81-6. 2005
    ....
  22. pmc Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes
    Koji Numata
    Technology and Development Team for Mammalian Cellular Dynamics, BioResource Center BRC, RIKEN Tsukuba Institute, Ibaraki 305 0074, Japan
    BMC Genomics 10:392. 2009
    ....
  23. ncbi request reprint Gene content of the 750-kb critical region for mouse embryonic ectoderm lethal tcl-w5
    Kuniya Abe
    Technology and Development Team for Mammalian Cellular Dynamics, BioResource Center, RIKEN Tsukuba Institute, 3 1 1 Koyadai, Tsukuba, Ibaraki 305 0074, Japan
    Mamm Genome 15:265-76. 2004
    ..Thus, this highly gene-rich region is essentially totally transcribed during early development and provides priority candidates to be screened for the t(w5) embryonic lesion...
  24. pmc Normal embryonic and germ cell development in mice lacking alpha 1,3-fucosyltransferase IX (Fut9) which show disappearance of stage-specific embryonic antigen 1
    Takashi Kudo
    Glycogene Function Team, Research Center for Glycoscience, National Institute of Advanced Industrial Science and Technology, Open Space Laboratory, Tsukuba, Ibaraki 305 8568, Japan
    Mol Cell Biol 24:4221-8. 2004
    ..Therefore, we conclude that expression of the SSEA-1 epitope in the developing mouse embryo is not essential for embryogenesis in vivo...
  25. pmc Whole-mount MeFISH: a novel technique for simultaneous visualization of specific DNA methylation and protein/RNA expression
    Hirosuke Shiura
    Technology and Development Team for Mammalian Genome Dynamics, RIKEN BioResource Center, Ibaraki, Japan
    PLoS ONE 9:e95750. 2014
    ..This whole-mount MeFISH technique should facilitate the study of the dynamics of DNA methylation status during embryonic development with unprecedented resolution. ..
  26. pmc Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized
    Hidenori Kiyosawa
    Technology and Development Team for Mammalian Cellular Dynamics, BioResource Center BRC, RIKEN Tsukuba Institute, Tsukuba, Ibaraki, Japan 305 0074
    Genome Res 15:463-74. 2005
    ..The tendency that the SATs are often not polyadenylated is conserved, even in the randomly chosen SAT genes in the plant Arabidopsis thaliana. Such common characteristics imply general roles of the SATs in regulation of gene expression...