Hisayuki Komaki

Summary

Affiliation: National Institute of Technology and Evaluation
Country: Japan

Publications

  1. request reprint
    Komaki H, Ichikawa N, Oguchi A, Hanamaki T, Fujita N. Genome-wide survey of polyketide synthase and nonribosomal peptide synthetase gene clusters in Streptomyces turgidiscabies NBRC 16081. J Gen Appl Microbiol. 2012;58:363-72 pubmed
    ..Our results suggest that S. turgidiscabies, unlike S. scabiei, harbors considerable genetic potential for producing diverse polyketide and peptide compounds. ..
  2. Komaki H, Sakurai K, Hosoyama A, Kimura A, Igarashi Y, Tamura T. Diversity of nonribosomal peptide synthetase and polyketide synthase gene clusters among taxonomically close Streptomyces strains. Sci Rep. 2018;8:6888 pubmed publisher
  3. Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Fujita N. Draft genome sequences of six type strains of the genus streptacidiphilus. Genome Announc. 2015;3: pubmed publisher
    ..These genome sequences will serve as valuable references for understanding their taxonomic relationships, genetic characteristics, and potentials for industry. ..
  4. Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y. Draft Genome Sequence of Marine-Derived Streptomyces sp. TP-A0873, a Producer of a Pyrrolizidine Alkaloid Bohemamine. Genome Announc. 2015;3: pubmed publisher
    ..In order to assess the biosynthetic potential of this strain, draft genome sequencing was carried out. The genome contained at least 14 gene clusters for polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS). ..
  5. Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Fujita N. Draft Genome Sequence of Streptomyces albus Strain NBRC 13014T, the Type Species of the Genus Streptomyces. Genome Announc. 2015;3: pubmed publisher
    ..albus strain NBRC 13014(T). The genome contains at least seven orphan polyketide synthase and nonribosomal peptide synthetase gene clusters. The genome sequence will also serve as a valuable reference for Streptomyces taxonomy. ..
  6. Zhou T, Komaki H, Ichikawa N, Hosoyama A, Sato S, Igarashi Y. Biosynthesis of akaeolide and lorneic acids and annotation of type I polyketide synthase gene clusters in the genome of Streptomyces sp. NPS554. Mar Drugs. 2015;13:581-96 pubmed publisher
    ..Genome analysis also indicated the presence of at least ten orphan type I PKS gene clusters that might be responsible for the production of new polyketides. ..
  7. Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Fujita N. Genome-based analysis of non-ribosomal peptide synthetase and type-I polyketide synthase gene clusters in all type strains of the genus Herbidospora. BMC Res Notes. 2015;8:548 pubmed publisher
    ..This genome analysis suggested that Herbidospora strains are an untapped and attractive source of novel secondary metabolites. ..
  8. Komaki H, Ichikawa N, Hosoyama A, Fujita N, Thamchaipenet A, Igarashi Y. Draft Genome Sequence of Linfuranone Producer Microbispora sp. GMKU 363. Genome Announc. 2015;3: pubmed publisher
    ..The biosynthetic gene cluster for linfuranone was identified by analyzing polyketide synthase genes in the genome. ..
  9. Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Suzuki K, et al. Draft Genome Sequence of Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556. Genome Announc. 2016;4: pubmed publisher
    ..An average nucleotide identity analysis confirmed that the taxonomic identification is correct. The genome sequence will serve as a valuable reference for genome mining to search new secondary metabolites. ..

More Information

Publications20

  1. Komaki H, Hosoyama A, Ichikawa N, Panbangred W, Igarashi Y. Draft Genome Sequence of Streptomyces sp. SPMA113, a Prajinamide Producer. Genome Announc. 2016;4: pubmed publisher
    ..The genome harbors at least 30 gene clusters for synthases of polyketide and nonribosomal peptide, suggesting its potential to produce diverse secondary metabolites. ..
  2. Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y. Draft genome sequence of Streptomyces sp. TP-A0882 reveals putative butyrolactol biosynthetic pathway. FEMS Microbiol Lett. 2015;362: pubmed publisher
    ..Annotation of gene functions enabled us to identify the type I PKS gene cluster for butyrolactol biosynthesis and propose a plausible biosynthetic pathway for this unique polyketide. ..
  3. Komaki H, Ichikawa N, Hosoyama A, Fujita N, Harunari E, Igarashi Y. Draft Genome Sequence of an Anthracimycin Producer, Streptomyces sp. TP-A0875. Genome Announc. 2015;3: pubmed publisher
    ..The gene cluster for anthracimycin biosynthesis was identified based on the PKS domain organization. ..
  4. Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y. Draft Genome Sequence of Streptomyces sp. TP-A0890, a Producer of FR-900452 and A-74863a. Genome Announc. 2015;3: pubmed publisher
    ..A prediction of gene functions based on the sequence similarity allowed us to assign the biosynthetic gene clusters for FR-900452 and A-74863a. ..
  5. Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y. Draft Genome Sequence of Streptomyces sp. TP-A0871, a Producer of Heronamide C. Genome Announc. 2015;3: pubmed publisher
    ..The genome encodes over nine orphan gene clusters for polyketide and/or nonribosomal peptide syntheses. ..
  6. Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y. Draft Genome Sequence of Streptomyces sp. TP-A0356, a Producer of Yatakemycin. Genome Announc. 2015;3: pubmed publisher
    ..The genome sequence data suggest the presence of at least nine gene clusters for polyketide synthases and nonribosomal peptide synthetases in this strain. ..
  7. Komaki H, Hosoyama A, Ichikawa N, Igarashi Y. Draft Genome Sequence of Marine-Derived Bacillus subtilis TP-B0611, a Producer of Bacilosarcins and Amicoumacins. Genome Announc. 2016;4: pubmed publisher
    ..The hybrid PKS/NRPS gene cluster was identified to be responsible for the biosynthesis of bacilosarcins and amicoumacins. ..
  8. Komaki H, Hosoyama A, Yabe S, Yokota A, Uchino Y, Takano H. Draft Genome Sequence of Thermogemmatispora onikobensis NBRC 111776T, an Aerial Mycelium- and Spore-Forming Thermophilic Bacterium Belonging to the Class Ktedonobacteria. Genome Announc. 2016;4: pubmed publisher
  9. Komaki H, Hosoyama A, Ichikawa N, Igarashi Y. Draft Genome Sequence of Streptomyces sp. TP-A0874, a Catechoserine Producer. Genome Announc. 2016;4: pubmed publisher
    ..The genome harbors at least six gene clusters for polyketide and nonribosomal peptide biosyntheses. The biosynthetic gene cluster for catechoserines was identified by bioinformatic analysis. ..
  10. Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y. Draft Genome Sequence of Nonomuraea sp. TP-A0861, a Producer of Myxochelin A. Genome Announc. 2015;3: pubmed publisher
    ..Here, we report its draft genome sequence. The genome contains at least three nonribosomal peptide synthetase gene clusters, one of which is proposed to be responsible for the biosynthesis of myxochelin A. ..
  11. Komaki H, Hosoyama A, Kimura A, Ichikawa N, Igarashi Y. Draft Genome Sequence of an Anicemycin Producer, Streptomyces sp. TP-A0648. Genome Announc. 2017;5: pubmed publisher
    ..The genome harbors at least 12 biosynthetic gene clusters for polyketides and nonribosomal peptides, suggesting the potential to produce diverse secondary metabolites. ..