Masumi Abe

Summary

Affiliation: National Institute of Radiological Sciences
Country: Japan

Publications

  1. ncbi request reprint [Next generation gene-expression profiling procedure: identification of unknown genes and non-coding transcripts]
    Masumi Abe
    Tanpakushitsu Kakusan Koso 48:1443-9. 2003
  2. pmc A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: toward the strict alignment of valid fragments across electrophoretic patterns
    Koji Kadota
    Transcriptome Research Center, National Institute of Radiological Sciences NIRS, 9 1, Anagawa 4 chome, Chiba shi 263 8555, Japan
    BMC Bioinformatics 6:43. 2005
  3. pmc A sensitive transcriptome analysis method that can detect unknown transcripts
    Ryutaro Fukumura
    Transcriptome Profiling Group, National Institute of Radiological Sciences, Anagawa 4 9 1, Inage Ku, Chiba shi, Chiba 263 8555, Japan
    Nucleic Acids Res 31:e94. 2003
  4. ncbi request reprint More than 40,000 transcripts, including novel and noncoding transcripts, in mouse embryonic stem cells
    Ryoko Araki
    Transcriptome Research Center, National Institute of Radiological Sciences, Chiba, Japan
    Stem Cells 24:2522-8. 2006
  5. ncbi request reprint Sequence analysis of 193.4 and 83.9 kbp of mouse and chicken genomic DNAs containing the entire Prkdc (DNA-PKcs) gene
    Akira Fujimori
    National Institute of Radiological Sciences, 4 9 1 Anagawa, Inage Ku, Chiba 263 8555, Japan
    Radiat Res 157:298-305. 2002
  6. ncbi request reprint Restricted expression and photic induction of a novel mouse regulatory factor X4 transcript in the suprachiasmatic nucleus
    Ryoko Araki
    Transcriptome Research Center, National Institute of Radiological Sciences, Chiba shi, Chiba 263 8555, Japan
    J Biol Chem 279:10237-42. 2004
  7. ncbi request reprint High-coverage profiling analysis of genes expressed during rice seed development, using an improved amplified fragment length polymorphism technique
    Kiyoshi Suzuki
    Graduate School of Agriculture and Biological Sciences, Osaka Prefecture University, Gakuen cho 1 1, Sakai, Osaka 599 8531, Japan
    Funct Integr Genomics 5:117-27. 2005
  8. ncbi request reprint Equivalency of nuclear transfer-derived embryonic stem cells to those derived from fertilized mouse blastocysts
    Sayaka Wakayama
    Laboratory for Genomic Programming, RIKEN Center for Developmental Biology, Kobe, Japan
    Stem Cells 24:2023-33. 2006

Collaborators

  • Akira Fujimori
  • Koji Kadota
  • Satoshi Tanaka
  • Ryoko Araki
  • Ryutaro Fukumura
  • Toshiyuki Saito
  • Hirokazu Takahashi
  • Sayaka Wakayama
  • Kiyoshi Suzuki
  • Kunio Shiota
  • Nobuko Suzuki
  • Takafusa Hikichi
  • Yoshimichi Tabata
  • Sho Senda
  • Masako Suzuki
  • Martin L Jakt
  • Masashi Miyake
  • Shin ichi Nishikawa
  • Nguyen Van Thuan
  • Hiroshi Ohta
  • Teruhiko Wakayama
  • Yasuji Kasama
  • Satoshi Kishigami
  • Naokazu Sasaki
  • Eiji Mizutani
  • Mitsuhiro Okada
  • Yuko Sakaide
  • Atsushi Hattori
  • Shinichi Kitamura
  • Takehiro Masumura
  • Shin ichi T Inouye
  • Nanae Umeda
  • Mitsugu Sujino
  • Fuyan Sun
  • Shinji Sato
  • Yoko Tsutsumi
  • Kouichi Tatsumi

Detail Information

Publications8

  1. ncbi request reprint [Next generation gene-expression profiling procedure: identification of unknown genes and non-coding transcripts]
    Masumi Abe
    Tanpakushitsu Kakusan Koso 48:1443-9. 2003
  2. pmc A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: toward the strict alignment of valid fragments across electrophoretic patterns
    Koji Kadota
    Transcriptome Research Center, National Institute of Radiological Sciences NIRS, 9 1, Anagawa 4 chome, Chiba shi 263 8555, Japan
    BMC Bioinformatics 6:43. 2005
    ..For accurate comparison of electrophoretic patterns, further inspection and normalization of electrophoretic data after fragment sizing by conventional strategies is needed...
  3. pmc A sensitive transcriptome analysis method that can detect unknown transcripts
    Ryutaro Fukumura
    Transcriptome Profiling Group, National Institute of Radiological Sciences, Anagawa 4 9 1, Inage Ku, Chiba shi, Chiba 263 8555, Japan
    Nucleic Acids Res 31:e94. 2003
    ..Moreover, the method requires no sequence information and so is applicable even to eukaryotes for which there is no genome information available...
  4. ncbi request reprint More than 40,000 transcripts, including novel and noncoding transcripts, in mouse embryonic stem cells
    Ryoko Araki
    Transcriptome Research Center, National Institute of Radiological Sciences, Chiba, Japan
    Stem Cells 24:2522-8. 2006
    ..It includes most transcription regulation factor-encoding genes and a significant number of unknown and noncoding transcripts...
  5. ncbi request reprint Sequence analysis of 193.4 and 83.9 kbp of mouse and chicken genomic DNAs containing the entire Prkdc (DNA-PKcs) gene
    Akira Fujimori
    National Institute of Radiological Sciences, 4 9 1 Anagawa, Inage Ku, Chiba 263 8555, Japan
    Radiat Res 157:298-305. 2002
    ..Comparative analyses of the genome strongly suggested that the region contains only two genes for Prkdc and Mcm4; however, several conserved sequences and cis elements were also predicted...
  6. ncbi request reprint Restricted expression and photic induction of a novel mouse regulatory factor X4 transcript in the suprachiasmatic nucleus
    Ryoko Araki
    Transcriptome Research Center, National Institute of Radiological Sciences, Chiba shi, Chiba 263 8555, Japan
    J Biol Chem 279:10237-42. 2004
    ..A histochemical study showed a localization of the products in the nucleus. This is the first report on mouse RFX4, which contains the RFX DNA-binding motif. Our investigation may provide clues to the physiological function of RFX4...
  7. ncbi request reprint High-coverage profiling analysis of genes expressed during rice seed development, using an improved amplified fragment length polymorphism technique
    Kiyoshi Suzuki
    Graduate School of Agriculture and Biological Sciences, Osaka Prefecture University, Gakuen cho 1 1, Sakai, Osaka 599 8531, Japan
    Funct Integr Genomics 5:117-27. 2005
    ..Our results will contribute to a better understanding of comparative transcriptomics in all plant species...
  8. ncbi request reprint Equivalency of nuclear transfer-derived embryonic stem cells to those derived from fertilized mouse blastocysts
    Sayaka Wakayama
    Laboratory for Genomic Programming, RIKEN Center for Developmental Biology, Kobe, Japan
    Stem Cells 24:2023-33. 2006
    ..These similarities of NT-ESCs and ESCs indicate that murine therapeutic cloning by somatic cell NT can provide a reliable model for preclinical stem cell research...