Affiliation: National Institute of Radiological Sciences
- A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: toward the strict alignment of valid fragments across electrophoretic patternsKoji Kadota
Transcriptome Research Center, National Institute of Radiological Sciences NIRS, 9 1, Anagawa 4 chome, Chiba shi 263 8555, Japan
BMC Bioinformatics 6:43. 2005..For accurate comparison of electrophoretic patterns, further inspection and normalization of electrophoretic data after fragment sizing by conventional strategies is needed...
- [Next generation gene-expression profiling procedure: identification of unknown genes and non-coding transcripts]Masumi Abe
Tanpakushitsu Kakusan Koso 48:1443-9. 2003
- A sensitive transcriptome analysis method that can detect unknown transcriptsRyutaro Fukumura
Transcriptome Profiling Group, National Institute of Radiological Sciences, Anagawa 4-9-1, Inage-ku, Chiba-shi, Chiba 263-8555, Japan
Nucleic Acids Res 31:e94. 2003..Moreover, the method requires no sequence information and so is applicable even to eukaryotes for which there is no genome information available...
- More than 40,000 transcripts, including novel and noncoding transcripts, in mouse embryonic stem cellsRyoko Araki
Transcriptome Research Center, National Institute of Radiological Sciences, Chiba, Japan
Stem Cells 24:2522-8. 2006..It includes most transcription regulation factor-encoding genes and a significant number of unknown and noncoding transcripts...
- Sequence analysis of 193.4 and 83.9 kbp of mouse and chicken genomic DNAs containing the entire Prkdc (DNA-PKcs) geneAkira Fujimori
National Institute of Radiological Sciences, 4 9 1 Anagawa, Inage Ku, Chiba 263 8555, Japan
Radiat Res 157:298-305. 2002..Comparative analyses of the genome strongly suggested that the region contains only two genes for Prkdc and Mcm4; however, several conserved sequences and cis elements were also predicted...
- Restricted expression and photic induction of a novel mouse regulatory factor X4 transcript in the suprachiasmatic nucleusRyoko Araki
Transcriptome Research Center, National Institute of Radiological Sciences, Chiba shi, Chiba 263 8555, Japan
J Biol Chem 279:10237-42. 2004..A histochemical study showed a localization of the products in the nucleus. This is the first report on mouse RFX4, which contains the RFX DNA-binding motif. Our investigation may provide clues to the physiological function of RFX4...
- High-coverage profiling analysis of genes expressed during rice seed development, using an improved amplified fragment length polymorphism techniqueKiyoshi Suzuki
Graduate School of Agriculture and Biological Sciences, Osaka Prefecture University, Gakuen-cho 1-1, Sakai, Osaka 599-8531, Japan
Funct Integr Genomics 5:117-27. 2005..Our results will contribute to a better understanding of comparative transcriptomics in all plant species...
- Equivalency of nuclear transfer-derived embryonic stem cells to those derived from fertilized mouse blastocystsSayaka Wakayama
Laboratory for Genomic Programming, RIKEN Center for Developmental Biology, Kobe, Japan
Stem Cells 24:2023-33. 2006..These similarities of NT-ESCs and ESCs indicate that murine therapeutic cloning by somatic cell NT can provide a reliable model for preclinical stem cell research...