Affiliation: National Institute of Radiological Sciences
- [Next generation gene-expression profiling procedure: identification of unknown genes and non-coding transcripts]Masumi Abe
Tanpakushitsu Kakusan Koso 48:1443-9. 2003
- A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: toward the strict alignment of valid fragments across electrophoretic patternsKoji Kadota
Transcriptome Research Center, National Institute of Radiological Sciences NIRS, 9 1, Anagawa 4 chome, Chiba shi 263 8555, Japan
BMC Bioinformatics 6:43. 2005..For accurate comparison of electrophoretic patterns, further inspection and normalization of electrophoretic data after fragment sizing by conventional strategies is needed...
- A sensitive transcriptome analysis method that can detect unknown transcriptsRyutaro Fukumura
Transcriptome Profiling Group, National Institute of Radiological Sciences, Anagawa 4 9 1, Inage Ku, Chiba shi, Chiba 263 8555, Japan
Nucleic Acids Res 31:e94. 2003..Moreover, the method requires no sequence information and so is applicable even to eukaryotes for which there is no genome information available...
- More than 40,000 transcripts, including novel and noncoding transcripts, in mouse embryonic stem cellsRyoko Araki
Transcriptome Research Center, National Institute of Radiological Sciences, Chiba, Japan
Stem Cells 24:2522-8. 2006..It includes most transcription regulation factor-encoding genes and a significant number of unknown and noncoding transcripts...
- Sequence analysis of 193.4 and 83.9 kbp of mouse and chicken genomic DNAs containing the entire Prkdc (DNA-PKcs) geneAkira Fujimori
National Institute of Radiological Sciences, 4 9 1 Anagawa, Inage Ku, Chiba 263 8555, Japan
Radiat Res 157:298-305. 2002..Comparative analyses of the genome strongly suggested that the region contains only two genes for Prkdc and Mcm4; however, several conserved sequences and cis elements were also predicted...
- Restricted expression and photic induction of a novel mouse regulatory factor X4 transcript in the suprachiasmatic nucleusRyoko Araki
Transcriptome Research Center, National Institute of Radiological Sciences, Chiba shi, Chiba 263 8555, Japan
J Biol Chem 279:10237-42. 2004..A histochemical study showed a localization of the products in the nucleus. This is the first report on mouse RFX4, which contains the RFX DNA-binding motif. Our investigation may provide clues to the physiological function of RFX4...
- High-coverage profiling analysis of genes expressed during rice seed development, using an improved amplified fragment length polymorphism techniqueKiyoshi Suzuki
Graduate School of Agriculture and Biological Sciences, Osaka Prefecture University, Gakuen cho 1 1, Sakai, Osaka 599 8531, Japan
Funct Integr Genomics 5:117-27. 2005..Our results will contribute to a better understanding of comparative transcriptomics in all plant species...
- Equivalency of nuclear transfer-derived embryonic stem cells to those derived from fertilized mouse blastocystsSayaka Wakayama
Laboratory for Genomic Programming, RIKEN Center for Developmental Biology, Kobe, Japan
Stem Cells 24:2023-33. 2006..These similarities of NT-ESCs and ESCs indicate that murine therapeutic cloning by somatic cell NT can provide a reliable model for preclinical stem cell research...