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Species | Kohji YamamotoSummaryAffiliation: Kyushu University Country: Japan Publications
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Publications
Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activityKohji Yamamoto
Faculty of Agriculture, Kyushu University Graduate School, 6 10 1 Hakozaki, Higashi ku, Fukuoka 812 8581, Japan Electronic address
Biochim Biophys Acta 1830:3711-8. 2013..Glutathione transferases (GSTs) are members of a major family of detoxification enzymes. Here, we report the crystal structure of a sigma-class GST of Bombyx mori, bmGSTS1, to gain insight into the mechanism catalysis...
Structural basis for catalytic activity of a silkworm Delta-class glutathione transferaseKohji Yamamoto
Faculty of Agriculture, Kyushu University Graduate School, 6 10 1 Hakozaki, Higashi ku, Fukuoka 812 8581, Japan
Biochim Biophys Acta 1820:1469-74. 2012..Here, we determined the crystal structure of a Delta-class GST from Bombyx mori (bmGSTD) to examine its catalytic residues...
Cloning, expression and characterization of theta-class glutathione S-transferase from the silkworm, Bombyx moriKohji Yamamoto
Laboratory of Insect Genetic Resources, Faculty of Agriculture, Kyushu University, 6 10 1 Hakozaki, Higashi ku, Fukuoka, Fukuoka 812 8581, Japan
Comp Biochem Physiol B Biochem Mol Biol 141:340-6. 2005..Incubation for 30 min at temperatures below 50 degrees C also affected the activity insignificantly. The Michaelis constant for 1-chloro-2,4-dinitrobenzene was 0.48 mM...
Superoxide dismutase from the silkworm, Bombyx mori: sequence, distribution, and overexpressionKohji Yamamoto
Laboratory of Insect Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka, Japan
Biosci Biotechnol Biochem 69:507-14. 2005..bmSOD at 4 degrees C retained almost all of its original activity after incubation at pH 4-11 for 24 h. Incubation (pH 7) for 30 min at temperatures below 40 degrees C also affected activity insignificantly...
Catalase from the silkworm, Bombyx mori: gene sequence, distribution, and overexpressionKohji Yamamoto
Laboratory of Insect Genetic Resources, Faculty of Agriculture, Kyushu University, 6 10 1 Hakozaki, Higashi ku, Fukuoka, Fukuoka 812 8581, Japan
Insect Biochem Mol Biol 35:277-83. 2005..The Michaelis constant for hydrogen peroxide was evaluated to be 28 mM at pH 6.5 and 30 degrees C. rCAT was suggested to be a member of the typical catalase family...
Expression and characterization of a sigma-class glutathione S-transferase of the fall webworm, Hyphantria cuneaKohji Yamamoto
Institute of Genetic Resources, Faculty of Agriculture, Kyushu University Graduate School, Fukuoka, Japan
Biosci Biotechnol Biochem 71:553-60. 2007..We also found that as compared to B. mori Sigma-class GST, rhcGST had a higher affinity for fenitrothion, an organophosphorus insecticide...
Facilitation of dissociation reaction of nucleotides bound to Mycobacterium tuberculosis DnaAKohji Yamamoto
Graduate School of Bioresource and Bioenvironmental Science, Kyushu University, Fukuoka 812 8581, Japan
J Biochem 143:759-64. 2008..We suggest that the outcome of intra-cellular DnaA(TB)-nucleotide interactions, hence DnaA(TB) activity, is influenced by phospholipids...
Biochemical properties of an omega-class glutathione S-transferase of the silkmoth, Bombyx moriKohji Yamamoto
Institute of Genetic Resources, Faculty of Agriculture, Kyushu University Graduate School, Higashi ku, Fukuoka 812 8581, Japan
Comp Biochem Physiol C Toxicol Pharmacol 149:461-7. 2009..These results indicate that bmGSTO could be involved in the increase in level of insecticide resistance for lepidopteran insects...
Identification and expression analysis of minichromosome maintenance proteins in the silkworm, Bombyx moriKohji Yamamoto
Laboratories of Insect Genetic Resources, Faculty of Agriculture, Kyushu University, 6 10 1 Hakozaki, Higashi ku, Fukuoka 812 8581, Japan
J Insect Sci 10:148. 2010..Expression plasmids were transformed into competent Escherichia coli and overexpressed. This is the first report on the identification of MCM helicase of the silkworm, B. mori...
Molecular characterization of an insecticide-induced novel glutathione transferase in silkwormKohji Yamamoto
Faculty of Agriculture, Kyushu University Graduate School, Higashi ku, Fukuoka, Japan
Biochim Biophys Acta 1810:420-6. 2011..We have identified a GST mRNA that was induced in the fat bodies of a silkworm strain exhibiting diazinon resistance and have investigated the enzyme properties of this GST...
Characterization of an omega-class glutathione S-transferase in the stress response of the silkmothK Yamamoto
Faculty of Agriculture, Kyushu University Graduate School, Higashi ku, Fukuoka, Japan
Insect Mol Biol 20:379-86. 2011..Thus, bmGSTO could contribute to increasing the environmental stress resistance of lepidopteran insects...
Molecular and biochemical characterization of manganese-containing superoxide dismutase from the silkworm, Bombyx moriKohji Yamamoto
Laboratory of Insect Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka 812 8581, Japan
Comp Biochem Physiol B Biochem Mol Biol 142:403-9. 2005..Its activity was never affected by incubation at pH 7 for 30 min below 50 degrees C...
Proteome analysis of silk gland proteins from the silkworm, Bombyx moriPingbo Zhang
Faculty of Agriculture, Institute of Genetic Resources, Kyushu University, Fukuoka, Japan
Proteomics 6:2586-99. 2006..The current analysis contributes to our understanding of proteins expressed by the silk gland not only of the model lepidopteran B. mori, but also to proteins from other silk-producing insects such as Philosamia cynthia ricini...
Proteomic studies of lipopolysaccharide-induced polypeptides in the silkworm, Bombyx moriYongqiang Wang
Laboratories of Insect Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan
Biosci Biotechnol Biochem 68:1821-3. 2004..H2 and H3 were novel polypeptides. H4 was estimated to be attacin antibacterial polypeptide with high coverage of sequence. The amounts of all the induced polypeptides decreased at 48 h after the injection...
Overexpression in Escherichia coli and purification of recombinant CI-b1, a Kunitz-type chymotrypsin inhibitor of silkwormNingjia He
Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, 6 10 1, Hakozaki, Higashi ku, Fukuoka 812 8581, Japan
Protein Expr Purif 38:9-16. 2004..Recombinant CI-b1 immobilized on Ni-NTA resin was used to detect the interactions occurring between the CI-b1 and its target factors...
Proteomic profiling of the silkworm skeletal muscle proteins during larval-pupal metamorphosisPingbo Zhang
Institute of Genetic Resources, Kyushu University, Fukuoka 812 8581, Japan
J Proteome Res 6:2295-303. 2007..Three pupa-defective proteins were identified as isoforms of troponin I, followed by an immunoblotting validation. This data will be helpful in understanding the biochemistry of an insect ISM...
Utility of dry gel from two-dimensional electrophoresis for peptide mass fingerprinting analysis of silkworm proteinsPingbo Zhang
Laboratory of Insect Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan
Biosci Biotechnol Biochem 68:2148-54. 2004..Based on these results, we confirmed the utility of dry electrophoretic gels for proteomics of insect extracts...
Silkworm midgut proteins interacting with a hemolymph protease inhibitor, CI-8Yoshinori Ueno
Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan
Biosci Biotechnol Biochem 70:1557-63. 2006..The antibody also neutralized the CI-8 binding ability of p29 in the midgut membrane. p29 and p60 are perhaps proteinaceous factors involved in the uptake of CI-8 into the midgut through the membrane...
In vivo and in vitro interactions of the Bombyx mori chymotrypsin inhibitor b1 with Escherichia coliNingjia He
Laboratories of Insect Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka, Japan
Biosci Biotechnol Biochem 68:835-40. 2004..coli but never worked lethally. CI-b1 is speculated to be a mediator that scavenges intruding bacteria rather than a direct anti-bacterial factor. This is the first report confirming that CI-b1 is a lipopolysaccharide binding protein...
Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx moriYoshimitsu Kakuta
Faculty of Agriculture, Kyushu University Graduate School, 6 10 1 Hakozaki, Higashi ku, Fukuoka 812 8581, Japan
Biochim Biophys Acta 1810:1355-60. 2011..Here, we sought to further characterize this GST, bmGSTu, by solving and refining its crystal structure and identifying its catalytic residues...
Genes encoding small heat shock proteins of the silkworm, Bombyx moriDaisuke Sakano
Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, Japan
Biosci Biotechnol Biochem 70:2443-50. 2006..Heat shock triggered a substantial increase in the transcripts other than shsp21.4. The B. mori sHSPs are perhaps classified into at least two groups: sHSP21.4 and others...
Genomic structure and expression analysis of the gene encoding a silkworm basic Kunitz-type chymotrypsin inhibitorNingjia He
Institute of Insect Genetic Resources, Graduate School of Bioresource and Bioenvironmental Science, Kyushu University, 6-10-1, Hakozaki, Fukuoka 812-8581, Higashi, Japan
Biochim Biophys Acta 1628:71-7. 2003..According to our data, we discussed the transcriptional factors putatively responsible for the physiological role of CIb1 in the silkworm hemolymph...
Proteomic studies of isoforms of the P25 component of Bombyx mori fibroinPingbo Zhang
Institute of Genetic Resources, Kyushu University, Fukuoka, Japan
Biosci Biotechnol Biochem 69:2086-93. 2005..mandarina. It is suggested that this diversity of P25 isoforms depends on phosphorylation modification in addition to glycosylation...
Structural properties of silkworm small heat-shock proteins: sHSP19.9 and sHSP20.8Tofazzal Hossain
Institute of Genetic Resources, Faculty of Agriculture, Kyushu University, Fukuoka, Japan
Biosci Biotechnol Biochem 74:1556-63. 2010..sHSP20.8 and sHSP19.9 with dithiothreitol were stable against lyophilization, autoclaving at 120 degrees C, and boiling...
Modulation of Mycobacterium tuberculosis DnaA protein-adenine-nucleotide interactions by acidic phospholipidsKohji Yamamoto
Biomedical Research, The University of Texas Health Center at Tyler, 11937 U.S. Hwy @ 271, Tyler, TX 75708-3154, U.S.A
Biochem J 363:305-11. 2002..tuberculosis oriC involves intimate interactions between DnaA, adenine nucleotides and membrane phospholipids, and the latter helps to ensure that only the ATP form of the DnaA protein interacts continuously with oriC...
Phospholipids promote dissociation of ADP from the Mycobacterium avium DnaA proteinKohji Yamamoto
Department of Biochemistry, The University of Texas Health Center at Tyler, Tyler, TX 75703-3154, USA
J Biochem (Tokyo) 131:219-24. 2002..avium origin of replication. We suggest that the initiation of DNA replication in M. avium involves an interplay among DnaA, adenine nucleotides and phospholipids...
The intrinsic ATPase activity of Mycobacterium tuberculosis DnaA promotes rapid oligomerization of DnaA on oriCMurty V V S Madiraju
Biomedical Research, The University of Texas Health Center at Tyler, 75708 3154, USA
Mol Microbiol 59:1876-90. 2006..We propose that ATPase activity enables the DnaA protomers on oriC to rapidly form oligomeric complexes competent for replication initiation...
A case study on the effect of storage of advanced treated water in a building's plumbing system on trihalomethane levelsKohji Yamamoto
Osaka City Institute of Public Health and Environmental Sciences, 8 34, Tojo cho, Tennoji ku, Osaka 543 0026, Japan
Bull Environ Contam Toxicol 79:665-9. 2007..Annual changes in THM in the stored water were also examined. Increasing air temperature increased THMs levels except for bromoform...
[Studies on dynamics of protein folding/unfolding by using the laser-induced temperature jump technique]Yasuhisa Mizutani
Tanpakushitsu Kakusan Koso 47:670-6. 2002
Terahertz time-domain spectroscopy of amino acids and polypeptidesKohji Yamamoto
Molecular Photoscience Research Center, and Graduate School of Science and Technology, Kobe University, Nada, Kobe 657-8501, Japan
Biophys J 89:L22-4. 2005..The exponents are different between the monomers and polymers, and those of the two polypeptides suggest that the time dependences of the total dipole moments are similar in the timescale of subpico- to picoseconds...
Integration of molecular and classical linkage groups of the silkworm, Bombyx mori (n = 28)Yuji Yasukochi
Insect Genome Laboratory, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
Genome 48:626-9. 2005..As a result, the counterparts for 26 of 28 molecular LGs were identified with their counterparts of the classical LGs. Two visible markers, Sel and Xan, representing different classical LGs, were found to be linked...
