Research Topics
Genomes and GenesSpecies | Y SasakuraSummaryAffiliation: Kyoto University Country: Japan Publications
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Publications
Ascidian Wnt-7 gene is expressed exclusively in the tail neural tube of tailbud embryosY Sasakura
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo ku, Kyoto 606 8502, Japan
Dev Genes Evol 210:641-3. 2000..We report here that a new member of the ascidian Wnt gene family, HrWnt-7, was expressed in the tail neural tube at the early tailbud stage. Moreover, in cross-section, HrWnt-7 was expressed in the dorsal and ventral ependymal cells...
Application of Minos, one of the Tc1/mariner superfamily transposable elements, to ascidian embryos as a tool for insertional mutagenesisYasunori Sasakura
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo ku, Kyoto 606 8502, Japan
Gene 308:11-20. 2003..From these tests, we concluded that Minos transposase has complete activity when it is expressed in C. intestinalis, suggesting that Minos has the potential to be used for genome-wide insertional mutagenesis of C. intestinalis...
Identification of cis elements which direct the localization of maternal mRNAs to the posterior pole of ascidian embryosYasunori Sasakura
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo ku, Kyoto 606 8502, Japan
Dev Biol 250:128-44. 2002..These findings, especially the identification of the small localization element of HrWnt-5 mRNA, provide new insights into the localization of mRNAs during ascidian embryogenesis...
Ascidian Wnt-5 gene is involved in the morphogenetic movement of notochord cellsY Sasakura
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo ku, Kyoto 606 8502, Japan
Dev Growth Differ 43:573-82. 2001..These results suggest that HrWnt-5 regulates the morphogenetic movement of notochord cells during ascidian embryogenesis...
A gene encoding a new ONECUT class homeodomain protein in the ascidian Halocynthia roretzi functions in the differentiation and specification of neural cells in ascidian embryogenesisY Sasakura
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
Mech Dev 104:37-48. 2001..These results indicate that HrHNF-6 functions in the differentiation and regional specification of neural cells during ascidian embryogenesis...
Large-scale cDNA analysis of the maternal genetic information in the egg of Halocynthia roretzi for a gene expression catalog of ascidian developmentK W Makabe
Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606 8502, Japan
Development 128:2555-67. 2001..9% of the clones were exclusively maternal, while 40.6% of the maternal clones showed expression in the later stages. This study provides global insights about the genes expressed during early development...
Gene expression profiles in Ciona intestinalis tailbud embryosY Satou
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
Development 128:2893-904. 2001..The sequence information will also be used for further genome scientific approach to explore molecular mechanisms involved in the formation of one of the most primitive chordate body plans...
Expression patterns of musashi homologs of the ascidians, Halocynthia roretzi and Ciona intestinalisT Kawashima
Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606 8502, Japan
Dev Genes Evol 210:162-5. 2000..Ascidian musashi had three domains of zygotic expression: the brain, nerve cord, and mesenchyma. The temporal order of the onset in these domains was highly divergent between the two species of ascidian examined...
Enhancer detection in the ascidian Ciona intestinalis with transposase-expressing lines of MinosYasunori Sasakura
Shimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka, Japan
Dev Dyn 237:39-50. 2008..This technique allowed us to isolate transgenic lines that express GFP in restricted tissues. This system provides an easy and efficient method for large-scale enhancer detection in Ciona intestinalis...
Transposon mediated transgenesis in a marine invertebrate chordate: Ciona intestinalisYasunori Sasakura
Shimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka, 415 0025, Japan
Genome Biol 8:S3. 2007..A Tc1/mariner superfamily transposon, Minos, has excision and transposition activities in Ciona. Minos enables the creation of stable transgenic lines, enhancer detection, and insertional mutagenesis...
High-throughput enhancer trap by remobilization of transposon Minos in Ciona intestinalisSatoko Awazu
Shimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka, Japan
Genesis 45:307-17. 2007..This high-throughput enhancer trap screen will be useful to create new marker transgenic lines showing reporter gene expression in specific tissues and to identify novel patterns of gene expression...
Transposon-mediated insertional mutagenesis revealed the functions of animal cellulose synthase in the ascidian Ciona intestinalisYasunori Sasakura
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo ku, Kyoto 606 8502, Japan
Proc Natl Acad Sci U S A 102:15134-9. 2005..It is likely that ascidian cellulose synthase is required for the coordination of the metamorphic events in the trunk and tail in addition to cellulose biosynthesis...
Germline transgenesis of the ascidian Ciona intestinalis by electroporationTerumi Matsuoka
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan
Genesis 41:67-72. 2005....
An enhancer trap in the ascidian Ciona intestinalis identifies enhancers of its Musashi orthologous geneSatoko Awazu
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
Dev Biol 275:459-72. 2004..These results clearly demonstrate that an enhancer trap event that entrapped enhancers of Ci-Musashi occurred in C. intestinalis...
Minos transposon causes germline transgenesis of the ascidian Ciona savignyiTerumi Matsuoka
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
Dev Growth Differ 46:249-55. 2004..In addition, one insertion seemed to have caused an enhancer trapping. These results indicate that Minos provides a potential tool for transgenic techniques such as insertional mutagenesis in Ciona savignyi...
Germ-line transgenesis of the Tc1/mariner superfamily transposon Minos in Ciona intestinalisYasunori Sasakura
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo ku, Kyoto 606 8502, Japan
Proc Natl Acad Sci U S A 100:7726-30. 2003..In addition, an enhancer-trap line was obtained. This is a demonstration of efficient, Minos-mediated transgenesis in marine invertebrates...
A genomewide survey of developmentally relevant genes in Ciona intestinalis. VII. Molecules involved in the regulation of cell polarity and actin dynamicsYasunori Sasakura
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
Dev Genes Evol 213:273-83. 2003..Ciona intestinalis, therefore, may provide refined clues for the study of vertebrate development and evolution...
A genomewide survey of developmentally relevant genes in Ciona intestinalis. X. Genes for cell junctions and extracellular matrixYasunori Sasakura
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
Dev Genes Evol 213:303-13. 2003..In vertebrates these ancestral cell junctions appear to have evolved into more diverse, and possibly more complex, forms, compared with those in their urochordate siblings...
The draft genome of Ciona intestinalis: insights into chordate and vertebrate originsParamvir Dehal
U S Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
Science 298:2157-67. 2002..The ascidian genome has also acquired a number of lineage-specific innovations, including a group of genes engaged in cellulose metabolism that are related to those in bacteria and fungi...
A genomewide survey of developmentally relevant genes in Ciona intestinalis. V. Genes for receptor tyrosine kinase pathway and Notch signaling pathwayYutaka Satou
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo ku, Kyoto 606 8502, Japan
Dev Genes Evol 213:254-63. 2003..The gene set identified in the present analysis provides an insight into genes for the RTK, MAPK and Notch signaling pathways in the ancient chordate genome and thereby how chordates evolved these signaling pathway...
Euro chordates: Ascidian community swims ahead. The 4th International Tunicate meeting in Villefranche sur MerChristian Sardet
BioMarCell, UMR 7009, CNRS/UPMC, Station Zoologique, , Villefranche sur Mer, France
Dev Dyn 237:1207-13. 2008
A cDNA resource from the basal chordate Ciona intestinalisYutaka Satou
Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan
Genesis 33:153-4. 2002..This release is ready for use in cDNA cloning, micro/macroarray analysis, and other comprehensive genome-wide analyses for further molecular studies of basal chordates...
Culture of Ciona intestinalis in closed systemsJean Stephane Joly
INRA MSNC Group, DEPSN, UPR2197, Institut Fessard, CNRS, Gif sur Yvette, France
Dev Dyn 236:1832-40. 2007..Because these systems make it easier to rear Ciona intestinalis in laboratories, they increase the potentialities of this model organism for research...
Postplasmic/PEM RNAs: a class of localized maternal mRNAs with multiple roles in cell polarity and development in ascidian embryosFrancois Prodon
Department of Biology, Graduate School of Science, Osaka University, Osaka, Japan
Dev Dyn 236:1698-715. 2007..Finally, we propose a speculative model integrating recent data, and we also discuss the relationship between postplasmic/PEM RNAs, posterior specification, and germ cell formation in ascidians...
Germline transgenesis and insertional mutagenesis in the ascidian Ciona intestinalisYasunori Sasakura
Shimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka, Japan
Dev Dyn 236:1758-67. 2007..This review specifically addresses recent achievements of transformation techniques in Ciona, as exemplified using the Minos system...
Tissue-specific profile of DNA replication in the swimming larvae of Ciona intestinalisAkie Nakayama
Department of Zoology, Graduate School of Science, Kyoto University, Japan
Zoolog Sci 22:301-9. 2005..Our data showed that DNA synthesis in the larval trunk is not directly associated with the organization of adult organs, but it contributes to the speed of metamorphosis after settlement...
The amphioxus genome illuminates vertebrate origins and cephalochordate biologyLinda Z Holland
Marine Biology Research Division, Scripps Institution of Oceanography, La Jolla, California 92093 0202, USA
Genome Res 18:1100-11. 2008..Our results indicate that the amphioxus genome is elemental to an understanding of the biology and evolution of nonchordate deuterostomes, invertebrate chordates, and vertebrates...
