Koh Ida

Summary

Affiliation: Kitasato University
Country: Japan

Publications

  1. ncbi request reprint Crystal structure of heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96
    Koh Ida
    Department of Biosciences, School of Science, Kitasato University, 1 15 1 Kitasato, Sagamihara, Kanagawa 228 8555, Japan
    Biochem Biophys Res Commun 333:359-66. 2005
  2. doi request reprint Structural basis of proteolytic activation of L-phenylalanine oxidase from Pseudomonas sp. P-501
    Koh Ida
    Department of Biosciences, School of Science, Graduate School of Fundamental Life Science, Kitasato University, Kitasato, Sagamihara, Kanagawa, Japan
    J Biol Chem 283:16584-90. 2008
  3. doi request reprint High resolution X-ray crystal structures of L-phenylalanine oxidase (deaminating and decarboxylating) from Pseudomonas sp. P-501. Structures of the enzyme-ligand complex and catalytic mechanism
    Koh Ida
    Department of Biosciences, School of Science, Kitasato University, Kitasato 1 15 1, Sagamihara, Kanagawa 252 0329, Japan
    J Biochem 150:659-69. 2011
  4. doi request reprint Channeling and conformational changes in the heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96
    Tomotaka Moriguchi
    Division of Bioscience, Graduate School of Fundamental Life Science, Kitasato University, Kitasato 1 15 1, Sagamihara, Kanagawa 252 0329, Japan
    J Biochem 148:491-505. 2010
  5. ncbi request reprint Crystal structures of sodium-bound annexin A4
    Kohei Butsushita
    Biological Science Course, Graduate School of Science and Engineering, Aoyama Gakuin University, Sagamihara, Kanagawa, Japan
    Biosci Biotechnol Biochem 73:2274-80. 2009
  6. ncbi request reprint Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer
    Yuko Hisanaga
    Structural Biophysics Laboratory, RIKEN Harima Institute at SPring 8, Sayo, Hyogo, Japan
    J Biol Chem 279:31717-26. 2004
  7. ncbi request reprint RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation
    Go Ueno
    SPring 8 RIKEN, Kouto, Sayo gun, Hyogo, 679 5148, Japan
    J Struct Funct Genomics 7:15-22. 2006

Collaborators

Detail Information

Publications7

  1. ncbi request reprint Crystal structure of heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96
    Koh Ida
    Department of Biosciences, School of Science, Kitasato University, 1 15 1 Kitasato, Sagamihara, Kanagawa 228 8555, Japan
    Biochem Biophys Res Commun 333:359-66. 2005
    ..Based on the structures determined and on the previous works, the structure-function relationship on the heterotetrameric sarcosine oxidase is discussed...
  2. doi request reprint Structural basis of proteolytic activation of L-phenylalanine oxidase from Pseudomonas sp. P-501
    Koh Ida
    Department of Biosciences, School of Science, Graduate School of Fundamental Life Science, Kitasato University, Kitasato, Sagamihara, Kanagawa, Japan
    J Biol Chem 283:16584-90. 2008
    ..The possibility that an interaction of the hydrophobic side chain of substrate with the residues of the vestibule region may open the funnel as a putative amino acid channel is discussed...
  3. doi request reprint High resolution X-ray crystal structures of L-phenylalanine oxidase (deaminating and decarboxylating) from Pseudomonas sp. P-501. Structures of the enzyme-ligand complex and catalytic mechanism
    Koh Ida
    Department of Biosciences, School of Science, Kitasato University, Kitasato 1 15 1, Sagamihara, Kanagawa 252 0329, Japan
    J Biochem 150:659-69. 2011
    ....
  4. doi request reprint Channeling and conformational changes in the heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96
    Tomotaka Moriguchi
    Division of Bioscience, Graduate School of Fundamental Life Science, Kitasato University, Kitasato 1 15 1, Sagamihara, Kanagawa 252 0329, Japan
    J Biochem 148:491-505. 2010
    ..Oxygen molecules are probably located on the surface cavity and diffuse to the FMN isoalloxazine ring; the H(2)O(2) formed exits via the oxygen channel...
  5. ncbi request reprint Crystal structures of sodium-bound annexin A4
    Kohei Butsushita
    Biological Science Course, Graduate School of Science and Engineering, Aoyama Gakuin University, Sagamihara, Kanagawa, Japan
    Biosci Biotechnol Biochem 73:2274-80. 2009
    ..Only the side chain of Glu71 was moved by Na(+)-coordination in CBS I. These results indicate that Anx4 also binds not only Ca(2+) but also Na(+) ion in the CBS...
  6. ncbi request reprint Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer
    Yuko Hisanaga
    Structural Biophysics Laboratory, RIKEN Harima Institute at SPring 8, Sayo, Hyogo, Japan
    J Biol Chem 279:31717-26. 2004
    ..Based on these high resolution crystal structures, we propose a unidirectional Bi Uni Uni Bi Ping-Pong mechanism for the two-step acylation by ttLC-FACS...
  7. ncbi request reprint RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation
    Go Ueno
    SPring 8 RIKEN, Kouto, Sayo gun, Hyogo, 679 5148, Japan
    J Struct Funct Genomics 7:15-22. 2006
    ..BL26B1 has started user operation, and the automatic operation with the sample management system has been implemented at BL26B2...