Affiliation: Japan Agency for Marine-Earth Science and Technology
Takami H, Taniguchi T, Arai W, Takemoto K, Moriya Y, Goto S. An automated system for evaluation of the potential functionome: MAPLE version 2.1.0. DNA Res. 2016;: pubmed
..MAPLE version 2.1.0 is now available through the web interface (http://www.genome.jp/tools/maple/) 17 June 2016, date last accessed. ..
Takami H, Taniguchi T, Moriya Y, Kuwahara T, Kanehisa M, Goto S. Evaluation method for the potential functionome harbored in the genome and metagenome. BMC Genomics. 2012;13:699 pubmed publisher
..Thus, our method has the potential to be a powerful tool for comparative functional analysis in genomics and metagenomics, able to target unknown environments containing various uncultivable microbes within unidentified phyla. ..
Takami H, Nishi S, Lu J, Shimamura S, Takaki Y. Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench. Extremophiles. 2004;8:351-6 pubmed
..kaustophilus HTA426 genome, although the CDS organization in another lambda insert is identical to that in the HTA426 genome...
Takami H, Takaki Y, Chee G, Nishi S, Shimamura S, Suzuki H, et al
. Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus. Nucleic Acids Res. 2004;32:6292-303 pubmed
..Further analysis revealed some asymmetric amino acid substitutions between the thermophiles and the mesophiles, which are possibly associated with the thermoadaptation of the organism...
Takami H, Nakasone K, Takaki Y, Maeno G, Sasaki R, Masui N, et al
. Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis. Nucleic Acids Res. 2000;28:4317-31 pubmed
..subtilis genome. Out of 11 sigma factors which belong to the extracytoplasmic function family, 10 are unique to B. halodurans, suggesting that they may have a role in the special mechanism of adaptation to an alkaline environment...