Kazuki Saito

Summary

Affiliation: Chiba University
Country: Japan

Publications

  1. ncbi request reprint Genomic structure and expression analyses of serine acetyltransferase gene in Citrullus vulgaris (watermelon)
    K Saito
    Faculty of Pharmaceutical Sciences, Laboratory of Molecular Biology and Biotechnology in Research, Chiba University, Japan
    Gene 189:57-63. 1997
  2. ncbi request reprint Direct evidence for anthocyanidin synthase as a 2-oxoglutarate-dependent oxygenase: molecular cloning and functional expression of cDNA from a red forma of Perilla frutescens
    K Saito
    Laboratory of Molecular Biology and Biotechnology, Faculty of Pharmaceutical Sciences, Chiba University, Japan
    Plant J 17:181-9. 1999
  3. ncbi request reprint Regulation of sulfate transport and synthesis of sulfur-containing amino acids
    K Saito
    Laboratory of Molecular Biology and Biotechnology, Faculty of Pharmaceutical Sciences, Research Center of Medicinal Resources, Chiba University, Inage Ku, 263 8522, Japan
    Curr Opin Plant Biol 3:188-95. 2000
  4. ncbi request reprint [Plant metabolomics]
    Kazuki Saito
    Tanpakushitsu Kakusan Koso 48:2199-204. 2003
  5. doi request reprint Differential gene expression profiles of red and green forms of Perilla frutescens leading to comprehensive identification of anthocyanin biosynthetic genes
    Mami Yamazaki
    Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan
    FEBS J 275:3494-502. 2008
  6. ncbi request reprint A WD-repeat-containing putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens
    Kanokporn Sompornpailin
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Japan
    Plant Mol Biol 50:485-95. 2002
  7. ncbi request reprint Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics
    Masami Yokota Hirai
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Chiba 263 8522, Japan
    J Biol Chem 280:25590-5. 2005
  8. ncbi request reprint Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor
    Takayuki Tohge
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Chiba 263 8522, Japan
    Plant J 42:218-35. 2005
  9. ncbi request reprint Camptothecin biosynthetic genes in hairy roots of Ophiorrhiza pumila: cloning, characterization and differential expression in tissues and by stress compounds
    Yasuyo Yamazaki
    Graduate School of Pharmaceutical Sciences, Chiba University, 1 33 Yayoi cho, Inage Ku, Chiba, 263 8522 Japan
    Plant Cell Physiol 44:395-403. 2003
  10. pmc Comparative genomics and reverse genetics analysis reveal indispensable functions of the serine acetyltransferase gene family in Arabidopsis
    Mutsumi Watanabe
    Graduate School of Pharmaceutical Sciences, Chiba University, Inage Ku, Chiba 263 8522, Japan
    Plant Cell 20:2484-96. 2008

Collaborators

Detail Information

Publications53

  1. ncbi request reprint Genomic structure and expression analyses of serine acetyltransferase gene in Citrullus vulgaris (watermelon)
    K Saito
    Faculty of Pharmaceutical Sciences, Laboratory of Molecular Biology and Biotechnology in Research, Chiba University, Japan
    Gene 189:57-63. 1997
    ..Interestingly, the addition of pyrazole, which is a precursor of beta-pyrazolealanine (beta-PA) synthesized by SATase and cysteine/beta-PA synthase, enhanced the expression of Sat by ca. 2-fold...
  2. ncbi request reprint Direct evidence for anthocyanidin synthase as a 2-oxoglutarate-dependent oxygenase: molecular cloning and functional expression of cDNA from a red forma of Perilla frutescens
    K Saito
    Laboratory of Molecular Biology and Biotechnology, Faculty of Pharmaceutical Sciences, Chiba University, Japan
    Plant J 17:181-9. 1999
    ..This corresponds to the accumulation pattern of anthocyanin. The mechanism of the reaction catalyzed by ANS is discussed in relation to the molecular evolution of a family of 2-oxoglutarate-dependent oxygenases...
  3. ncbi request reprint Regulation of sulfate transport and synthesis of sulfur-containing amino acids
    K Saito
    Laboratory of Molecular Biology and Biotechnology, Faculty of Pharmaceutical Sciences, Research Center of Medicinal Resources, Chiba University, Inage Ku, 263 8522, Japan
    Curr Opin Plant Biol 3:188-95. 2000
    ..A unique autoregulatory mechanism that stabilizes mRNA levels has recently been proposed for the regulation of methionine synthesis...
  4. ncbi request reprint [Plant metabolomics]
    Kazuki Saito
    Tanpakushitsu Kakusan Koso 48:2199-204. 2003
  5. doi request reprint Differential gene expression profiles of red and green forms of Perilla frutescens leading to comprehensive identification of anthocyanin biosynthetic genes
    Mami Yamazaki
    Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan
    FEBS J 275:3494-502. 2008
    ..These results suggest that the genes of the whole anthocyanin biosynthetic pathway are regulated in a coordinated manner in perilla...
  6. ncbi request reprint A WD-repeat-containing putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens
    Kanokporn Sompornpailin
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Japan
    Plant Mol Biol 50:485-95. 2002
    ..We propose a model of genetic regulation in which the PFWD protein acts in signal transduction process in a variety of pathways through protein interaction with MYC proteins...
  7. ncbi request reprint Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics
    Masami Yokota Hirai
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Chiba 263 8522, Japan
    J Biol Chem 280:25590-5. 2005
    ..This strategy is applicable not only to plant but also to other organisms for functional elucidation of unknown genes...
  8. ncbi request reprint Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor
    Takayuki Tohge
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Chiba 263 8522, Japan
    Plant J 42:218-35. 2005
    ..The functional genomics approach through the integration of metabolomics and transcriptomics presented here provides an innovative means of identifying novel gene functions involved in plant metabolism...
  9. ncbi request reprint Camptothecin biosynthetic genes in hairy roots of Ophiorrhiza pumila: cloning, characterization and differential expression in tissues and by stress compounds
    Yasuyo Yamazaki
    Graduate School of Pharmaceutical Sciences, Chiba University, 1 33 Yayoi cho, Inage Ku, Chiba, 263 8522 Japan
    Plant Cell Physiol 44:395-403. 2003
    ..Plant stress compounds like salicylic acid repressed expression of OpSTR and OpTDC, suggesting coordinate regulation of these genes for camptothecin biosynthesis...
  10. pmc Comparative genomics and reverse genetics analysis reveal indispensable functions of the serine acetyltransferase gene family in Arabidopsis
    Mutsumi Watanabe
    Graduate School of Pharmaceutical Sciences, Chiba University, Inage Ku, Chiba 263 8522, Japan
    Plant Cell 20:2484-96. 2008
    ..Thus, the evolutionally conserved SERAT gene family is essential in cellular processes, and the substrates and products of SERAT must be exchangeable between the cytosol and organelles...
  11. ncbi request reprint Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-l-serine as a general regulator of gene expression in response to sulfur nutrition
    Masami Yokota Hirai
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Yayoi cho 1 33, Inage Ku, Chiba 263 8522, Japan
    Plant J 33:651-63. 2003
    ..It was also revealed that the sets of genes regulated under sulfur deficiency in leaves and roots differ considerably...
  12. ncbi request reprint Molecular characterization of a novel quinolizidine alkaloid O-tigloyltransferase: cDNA cloning, catalytic activity of recombinant protein and expression analysis in Lupinus plants
    Taketo Okada
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan
    Plant Cell Physiol 46:233-44. 2005
    ..These results indicated that this specialized acyltransferase, isolated for the first time as tigloyltransferase from nature, is committed to control the quinolizidine alkaloid patterns in a tissue-specific manner...
  13. ncbi request reprint Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition
    Yasuhiro Higashi
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Inage Ku, Chiba 263 8522, Japan
    Plant J 48:557-71. 2006
    ..The results suggest that seed storage proteins in Arabidopsis undergo multi-layer regulation, with emphasis on post-translational modifications that enable the plant to respond to sulfur deficiency...
  14. ncbi request reprint Post-genomics approaches for the elucidation of plant adaptive mechanisms to sulphur deficiency
    Masami Yokota Hirai
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, CREST of JST Japan Science and Technology Agency, Yayoi cho 1 33, Inage Ku, Chiba 263 8522, Japan
    J Exp Bot 55:1871-9. 2004
    ..In this review, these -omics studies that have revealed the network linking several pathways related to jasmonic acid (JA), oxidative stress response, auxin, and flavonoid to S metabolic pathway are summarized...
  15. ncbi request reprint Enhanced radical scavenging activity of genetically modified Arabidopsis seeds
    Takayuki Tohge
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Inage Ku, Chiba 263 8522, Japan
    Biotechnol Lett 27:297-303. 2005
    ..The present study suggests the feasibility of engineering a transcription factor of flavonoid biosynthesis for health beneficial plant seeds...
  16. pmc Biosynthesis of camptothecin. In silico and in vivo tracer study from [1-13C]glucose
    Yasuyo Yamazaki
    Graduate School of Pharmaceutical Sciences, Chiba University, 1 33 Yayoi cho, Inage Ku, Chiba 263 8522, Japan
    Plant Physiol 134:161-70. 2004
    ..This study provides the innovative example for how a computer-aided comprehensive metabolic analysis will refine the experimental design to obtain more precise biological information...
  17. pmc Lysine decarboxylase catalyzes the first step of quinolizidine alkaloid biosynthesis and coevolved with alkaloid production in leguminosae
    Somnuk Bunsupa
    Graduate School of Pharmaceutical Sciences, Chiba University, Chuo Ku, Chiba 260 8675, Japan
    Plant Cell 24:1202-16. 2012
    ..Site-directed mutagenesis and protein modeling studies revealed a structural basis for preferential LDC activity, suggesting an evolutionary implication of L/ODC in the QA-producing plants...
  18. ncbi request reprint Isolation and characterization of anthocyanin 5-O-glucosyltransferase in Perilla frutescens var. crispa by differential display
    Mami Yamazaki
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Japan
    Methods Mol Biol 317:255-66. 2006
    ..The biological characters of this enzyme were investigated by using the recombinant protein expressed in yeast. We have shown an example of the application of DD technique to the molecular biology in plant secondary metabolisms...
  19. pmc Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
    Masami Yokota Hirai
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Inage Ku, Chiba 263 8522, Japan
    Proc Natl Acad Sci U S A 101:10205-10. 2004
    ....
  20. ncbi request reprint Transport of camptothecin in hairy roots of Ophiorrhiza pumila
    Supaart Sirikantaramas
    Graduate School of Pharmaceutical Sciences, Chiba University, 1 33 Yayoi cho, Inage Ku, Chiba 263 8522, Japan
    Phytochemistry 68:2881-6. 2007
    ..This result indicates that CPT is biosynthesized at the ER and transported to accumulate in the vacuole by the same machinery that is used for vacuolar protein sorting. How O. pumila is insensitive to CPT is discussed...
  21. doi request reprint Camptothecin production by in vitro cultures and plant regeneration in Ophiorrhiza species
    Takashi Asano
    Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan
    Methods Mol Biol 547:337-45. 2009
    ..The established aseptic plants and hairy roots produced camptothecin, and O. pumila hairy roots accumulated highest amount of camptothecin. Furthermore, we have established methods of plant regeneration from O. pumila hairy roots...
  22. pmc Characterization and expression analysis of a serine acetyltransferase gene family involved in a key step of the sulfur assimilation pathway in Arabidopsis
    Cintia Goulart Kawashima
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Chiba 263 8522, Japan
    Plant Physiol 137:220-30. 2005
    ....
  23. ncbi request reprint Metabolomics and differential gene expression in anthocyanin chemo-varietal forms of Perilla frutescens
    Mami Yamazaki
    Graduate School of Pharmaceutical Sciences, Chiba University, Yayoi cho 1 33, Inage Ku, Chiba 263 8522, Japan
    Phytochemistry 62:987-95. 2003
    ..The possible regulatory network leading to differential anthocyanin accumulation in a form-specific manner is discussed...
  24. doi request reprint Suppression of camptothecin biosynthetic genes results in metabolic modification of secondary products in hairy roots of Ophiorrhiza pumila
    Takashi Asano
    Graduate School of Pharmaceutical Sciences, Chiba University, Chuo Ku, Chiba, Japan
    Phytochemistry 91:128-39. 2013
    ....
  25. ncbi request reprint Mechanistic study on the oxidation of anthocyanidin synthase by quantum mechanical calculation
    Jun Ichiro Nakajima
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Japan
    J Biol Chem 281:21387-98. 2006
    ..Molecular evolutional implications of ANS and related proteins are discussed in terms of reaction dynamics...
  26. doi request reprint Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana
    Ryo Nakabayashi
    Graduate School of Pharmaceutical Sciences, Chiba University, 1 33 Yayoi cho, Inage Ku, Chiba 263 8522, Japan
    Phytochemistry 70:1017-29. 2009
    ....
  27. pmc Mutations in topoisomerase I as a self-resistance mechanism coevolved with the production of the anticancer alkaloid camptothecin in plants
    Supaart Sirikantaramas
    Graduate School of Pharmaceutical Sciences, Chiba University, 1 33 Yayoi cho, Inage Ku, Chiba 263 8522, Japan
    Proc Natl Acad Sci U S A 105:6782-6. 2008
    ..Our results demonstrate the molecular mechanism of self-resistance to endogenously produced toxic compounds and the possibility of adaptive coevolution between the CPT production system and its target Top1 in the producing plants...
  28. ncbi request reprint Two distinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots
    Naoko Yoshimoto
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Yayoi cho 1 33, Inage Ku, Chiba 263 8522, Japan
    Plant J 29:465-73. 2002
    ....
  29. doi request reprint A polyhedral approach for understanding flavonoid biosynthesis in Arabidopsis
    Ryo Nakabayashi
    Graduate School of Pharmaceutical Sciences, Chiba University, Inage Ku, Chiba 263 8522, Japan
    N Biotechnol 27:829-36. 2010
    ..We focused on natural products chemistry in this polyhedral approach, which proved to be indispensable for elucidating the secondary metabolism in not only Arabidopsis but also other model-like and crop plants...
  30. ncbi request reprint Two flavonoid glucosyltransferases from Petunia hybrida: molecular cloning, biochemical properties and developmentally regulated expression
    Mami Yamazaki
    Laboratory of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Japan
    Plant Mol Biol 48:401-11. 2002
    ..Southern blotting analysis of genomic DNA indicates that both 3-GT and 5-GT genes exist in two copies in P. hybrida, respectively. The results are discussed in relation to the molecular evolution of flavonoid glycosyltransferases...
  31. ncbi request reprint UGT73C6 and UGT78D1, glycosyltransferases involved in flavonol glycoside biosynthesis in Arabidopsis thaliana
    Patrik Jones
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Core Research for Evolutional Science and Technology of Japan Science and Technology Corporation JST, Chiba 263 8522, Japan
    J Biol Chem 278:43910-8. 2003
    ..The present results suggest that UGT78D1 and UGT73C6 should be classified as UDP-rhamnose:flavonol-3-Orhamnosyltransferase and UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase, respectively...
  32. pmc Sulfur assimilatory metabolism. The long and smelling road
    Kazuki Saito
    Graduate School of Pharmaceutical Sciences, Chiba University, Inage Ku, Chiba 263 8522, Japan
    Plant Physiol 136:2443-50. 2004
  33. ncbi request reprint Recent advances in the biosynthesis and accumulation of anthocyanins
    Karin Springob
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, 1 33 Yayoi cho, Inage Ku, Chiba 263 8522, Japan
    Nat Prod Rep 20:288-303. 2003
    ..The literature from 1997 to the beginning of 2002 is reviewed, and 163 references are cited...
  34. doi request reprint General regulatory patterns of plant mineral nutrient depletion as revealed by serat quadruple mutants disturbed in cysteine synthesis
    Mutsumi Watanabe
    Graduate School of Pharmaceutical Sciences, Chiba University, Inage Ku, Chiba 263 8522, Japan
    Mol Plant 3:438-66. 2010
    ..In turn, this will advance our broader understanding of plant responses to a range of other nutrient stresses...
  35. pmc Physiological roles of the beta-substituted alanine synthase gene family in Arabidopsis
    Mutsumi Watanabe
    Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan
    Plant Physiol 146:310-20. 2008
    ..The level of gamma-glutamyl-beta-cyano-Ala decreased in the mutant bsas3;1, indicating the crucial role of Bsas3;1 in beta-cyano-Ala metabolism in vivo...
  36. ncbi request reprint Camptothecin: therapeutic potential and biotechnology
    Supaart Sirikantaramas
    Graduate School of Pharmaceutical Sciences, Chiba University, Yayoi cho, Inage Ku, Chiba, Japan
    Curr Pharm Biotechnol 8:196-202. 2007
    ..In addition, recent advance in the cloning and characterization of biosynthetic enzymes involved in CPT biosynthetic pathway provides valuable information for developing genetically engineered CPT-producing plants...
  37. ncbi request reprint Heavy metal tolerance of transgenic tobacco plants over-expressing cysteine synthase
    Cintia Goulart Kawashima
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, Yayoi cho 1 33, Inage Ku, Chiba 263 8522, Japan
    Biotechnol Lett 26:153-7. 2004
    ..These results suggest that the transgenic plants over-expressing cysteine synthase both in cytosol and chloroplasts can be applicable to phyto-remediation of Cd from contaminated soils...
  38. doi request reprint Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis
    Fumio Matsuda
    RIKEN Plant Science Center, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, Japan
    Plant J 70:624-36. 2012
    ..The genomic region and genes potentially responsible for the biosynthesis of apigenin-6,8-di-C-α-l-arabinoside are presented as an example of a critical mQTL identified by the analysis...
  39. ncbi request reprint Metabolite profiling of alkaloids and strictosidine synthase activity in camptothecin producing plants
    Yasuyo Yamazaki
    Graduate School of Pharmaceutical Sciences, Chiba University, 1 33 Yayoi cho, Inage Ku, Chiba 263 8522, Japan
    Phytochemistry 62:461-70. 2003
    ..The activity of strictosidine synthase, a key enzyme of camptothecin biosynthesis, was detected in the protein extracts of stems and roots of O. pumila, being correlated with the pattern of strictosidine synthase mRNA expression...
  40. ncbi request reprint A new member of plant CS-lyases. A cystine lyase from Arabidopsis thaliana
    Patrik R Jones
    Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University, CREST of Japan Science and Technology Corporation, Yayoi cho 1 33, Inage Ku, Japan
    J Biol Chem 278:10291-6. 2003
    ..thaliana genes annotated as tyrosine aminotransferase-like...
  41. pmc Physical and biochemical properties of mammalian DNase X proteins: non-AUG translation initiation of porcine and bovine mRNAs for DNase X
    Daisuke Shiokawa
    Department of Biochemistry, Faculty of Pharmaceutical Sciences, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278 8510, Japan
    Biochem J 392:511-7. 2005
    ..Interestingly, the translation of porcine and bovine DNase X proteins occurs in the absence of an in-frame AUG initiation codon. We show that their mRNAs utilize a conserved CUG triplet for translation initiation...
  42. doi request reprint Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids
    Ryo Nakabayashi
    RIKEN Center for Sustainable Resource Science, 1 7 22 Suehiro cho, Tsurumi ku, Yokohama, 230 0045, Japan Graduate School of Pharmaceutical Sciences, Chiba University, 1 8 1 Chuo ku, Chiba, 260 8675, Japan CREST, Japan Science and Technology Agency, 4 1 8 Honcho, Kawaguchi, Saitama, 332 0012, Japan
    Plant J 77:367-79. 2014
    ..These data confirm the usefulness of flavonoids for enhancing both biotic and abiotic stress tolerance in crops. ..
  43. pmc KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps
    Toshiaki Tokimatsu
    Kazusa DNA Research Institute, Kisarazu, Chiba 292 0818, Japan
    Plant Physiol 138:1289-300. 2005
    ..The presentation of data in this manner is useful for viewing metabolic data in a way that facilitates the discussion of gene function...
  44. ncbi request reprint Decoding genes with coexpression networks and metabolomics - 'majority report by precogs'
    Kazuki Saito
    RIKEN Plant Science Center, Tsurumi ku, Yokohama 230 0045, Japan
    Trends Plant Sci 13:36-43. 2008
    ..Here, we review the strategy of combining transcriptome and metabolome as a powerful technology for studying the functional genomics of model plants and also crop and medicinal plants...
  45. ncbi request reprint Potential of metabolomics as a functional genomics tool
    Raoul J Bino
    Plant Physiology Department, Wageningen University, Arboretumlaan 4, 6703 BD Wageningen, The Netherlands
    Trends Plant Sci 9:418-25. 2004
  46. ncbi request reprint Integrating genomics and metabolomics for engineering plant metabolic pathways
    Kirsi Marja Oksman-Caldentey
    VTT Biotechnology, PO Box 1500, 02044 VTT Espoo, Finland
    Curr Opin Biotechnol 16:174-9. 2005
    ..State-of-the art genomics tools can be combined with metabolic profiling to identify key genes that could be engineered for the production of improved crop plants...
  47. ncbi request reprint [Analytical system for metabolomics]
    Hideyuki Suzuki
    Tanpakushitsu Kakusan Koso 49:1893-9. 2004
  48. ncbi request reprint A proposed framework for the description of plant metabolomics experiments and their results
    Helen Jenkins
    Department of Computer Science, University of Wales, Penglais, Aberystwyth, Ceredigion, Wales, UK
    Nat Biotechnol 22:1601-6. 2004
    ..armet.org/). We seek to advance discussion and community adoption of a standard for metabolomics, which would promote principled collection, storage and transmission of experiment data...
  49. doi request reprint The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access
    Hideki Goda
    RIKEN Plant Science Center, Tsurumi, Yokohama, Kanagawa 230 0045, Japan
    Plant J 55:526-42. 2008
    ..The data set presented here will be a versatile resource for future hormone studies, and constitutes a reference for genome-wide gene expression in Arabidopsis...
  50. pmc Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana
    Miyako Kusano
    RIKEN Plant Science Center, 1 7 22, Yokohama, Kanagawa 230 0045, Japan
    BMC Syst Biol 1:53. 2007
    ..We investigated the metabolic network between wild-type and 2 mutant (methionine-over accumulation 1 [mto1] and transparent testa4 [tt4]) plants regarding the alteration of metabolite accumulation in Arabidopsis thaliana...
  51. ncbi request reprint [Recent advances on reaction mechanism of anthocyanin biosynthesis]
    Jun Ichiro Nakajima
    Tanpakushitsu Kakusan Koso 47:217-24. 2002
  52. doi request reprint Efficient and high-throughput vector construction and Agrobacterium-mediated transformation of Arabidopsis thaliana suspension-cultured cells for functional genomics
    Yoichi Ogawa
    Kazusa DNA Research Institute, 2 6 7 Kazusa Kamatari, Kisarazu, Chiba 292 0818, Japan
    Plant Cell Physiol 49:242-50. 2008
    ....