Research Topics
| Michele MorganteSummaryAffiliation: University of Udine Country: Italy Publications
| Collaborators
|
Detail Information
Publications
Resistance to Plasmopara viticola in grapevine 'Bianca' is controlled by a major dominant gene causing localised necrosis at the infection siteDiana Bellin
Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 208, 33100, Udine, Italy
Theor Appl Genet 120:163-76. 2009....
Phenotypic plasticity, QTL mapping and genomic characterization of bud set in black poplarFrancesco Fabbrini
Department for Innovation in Biological, Agro food and Forest systems, University of Tuscia, Via S, Camillo de Lellis, Viterbo 01100, Italy
BMC Plant Biol 12:47. 2012..nigra with 162 clonally replicated progeny was used to assess the phenotypic plasticity and genetic variation of bud set in two sites of contrasting environmental conditions...- Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamiliesSook Jung
Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
BMC Genomics 13:129. 2012..Recently the whole genome of three crop species, peach, apple and strawberry, which belong to different genera of the Rosaceae family, have been sequenced, allowing in-depth comparison of these genomes... - Annotating genomes with massive-scale RNA sequencingFrance Denoeud
CEA, DSV, Institut de Génomique, Genoscope, 2 rue Gaston Cremieux, CP5706, 91057 Evry, France
Genome Biol 9:R175. 2008..We present G-Mo.R-Se (Gene Modelling using RNA-Seq), an approach aimed at building gene models directly from RNA-Seq and demonstrate its utility on the grapevine genome... - A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistanceMarco Moroldo
UMR de Génomique Végétale, INRA CNRS UEVE, 2, rue Gaston Crémieux, CP5708, 91057 Evry Cedex, France
BMC Plant Biol 8:66. 2008..Its usefulness for the genome-wide mapping of genes for disease resistance, which is an important trait for grapevine, was then assessed... - Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in ArabidopsisXiaoping Tan
The Genome Center, University of California, Davis, California 95616, USA
BMC Plant Biol 7:56. 2007..8% of all ORFs so far annotated in Arabidopsis ecotype Col-0. Despite their prevalence in the genome and functional importance, there was little information regarding expression of these genes... - Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis viniferaErica Mica
Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita degli Studi di Milano, Milano, Italy
BMC Genomics 11:109. 2010..The editors and authors regret the inconvenience caused to readers by premature publication of the original paper... - High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis viniferaErica Mica
Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita degli Studi di Milano, Milano, Italy
BMC Genomics 10:558. 2009..The recent annotation of the genome of the grapevine (Vitis vinifera L.) allowed the identification of many putative conserved microRNA precursors, grouped into multiple gene families... 
Transposable elements and the plant pan-genomesMichele Morgante
Dipartimento di Scienze Agrarie ed Ambientali, Universita di Udine, Via delle Scienze 208, I 33100 Udine, Italy
Curr Opin Plant Biol 10:149-55. 2007....- Plant genome organisation and diversity: the year of the junk!Michele Morgante
Dipartimento di Scienze Agrarie ed Ambientali, Universita di Udine, Via delle Scienze 208, I 33100 Udine, Italy
Curr Opin Biotechnol 17:168-73. 2006..Future analyses of the functional roles of intergenic sequence variation will tell us if we will need to pay more attention not only to genes, but also to the 'junk' DNA surrounding them... - Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maizeMichele Morgante
Dipartimento di Scienze Agrarie ed Ambientali, Universita di Udine, Via delle Scienze 208, 33100 Udine, Italy
Nat Genet 37:997-1002. 2005..The maize genome is in constant flux, as transposable elements continue to change both the genic and nongenic fractions of the genome, profoundly affecting genetic diversity... - Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistanceGabriele Di Gaspero
Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 208, 33100, Udine, Italy
Theor Appl Genet 124:277-86. 2012..The coexistence of multiple resistance alleles or paralogues in the same chromosomal region but in different haplotypes counteracts efforts to pyramidise them in a diploid individual via conventional breeding... - Expansion and subfunctionalisation of flavonoid 3',5'-hydroxylases in the grapevine lineageLuigi Falginella
Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 208, 33100 Udine, Italy
BMC Genomics 11:562. 2010..In most plants, F3'5'H genes are present in low-copy number, but in grapevine they are highly redundant... - The powdery mildew resistance gene REN1 co-segregates with an NBS-LRR gene cluster in two Central Asian grapevinesCourtney Coleman
Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 208, 33100 Udine, Italy
BMC Genet 10:89. 2009..Eurasian Vitis vinifera varieties were all believed to be susceptible. REN1 is the first resistance gene naturally found in cultivated plants of Vitis vinifera... - Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation EcotillingFabio Marroni
Istituto di Genomica Applicata, 33100 Udine, Italy
Plant J 67:736-45. 2011..This proposed method for identification of rare polymorphisms allows accurate detection of variation in many individuals, and is cost-effective compared to individual sequencing... - The SSR-based molecular profile of 1005 grapevine (Vitis vinifera L.) accessions uncovers new synonymy and parentages, and reveals a large admixture amongst varieties of different geographic originGuido Cipriani
Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 208, 33100, Udine, Italy
Theor Appl Genet 121:1569-85. 2010..45 × 10(-27) and 9.35 × 10(-12) for unrelated and full sib individuals, respectively. A database of allele frequencies and SSR profiles of 32 reference cultivars are provided... - A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotypingGuido Cipriani
Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 208, 33100 Udine, Italy
BMC Plant Biol 8:127. 2008.... - From plant genomics to breeding practiceMichele Morgante
Dipartimento di Produzione Vegetale e Tecnologie Agrarie, Universita di Udine, Via delle Scienze 208, 33100, Udine, Italy
Curr Opin Biotechnol 14:214-9. 2003..Despite this progress, the role of marker-assisted selection in plant breeding will ultimately depend on the genetic model underlying quantitative variation... - Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivarSimone Scalabrin
Istituto di Genomica Applicata, Parco Scientifico e Tecnologico di Udine Luigi Danieli, Via J Linussio 51, 33100 Udine, Italy
BMC Genomics 11:204. 2010..A physical map is essential to positionally clone such genes and instrumental in a genome sequencing project... - Automated FingerPrint Background removal: FPBSimone Scalabrin
Istituto di Genomica Applicata IGA, via J, Linussio 51, I 33100 Udine, Italy
BMC Bioinformatics 10:127. 2009..That is why background peaks removal has become an important issue and needs to be automatized, especially in capillary electrophoresis based fingerprints... - Structured motifs searchMichele Morgante
Department of Crop Sciences and Agricultural Engineering, via delle Scienze 206, 33100 Udine, Italy
J Comput Biol 12:1065-82. 2005..Moreover, the time and space necessary to build the graph are linear in the number of occurrences of the component patterns... - The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phylaOlivier Jaillon
Genoscope CEA and UMR 8030 CNRS Genoscope Université d Evry, 2 rue Gaston Cremieux, BP5706, 91057 Evry, France
Nature 449:463-7. 2007..Furthermore, we explain the chronology of previously described whole-genome duplication events in the evolution of flowering plants... - Microsatellites are preferentially associated with nonrepetitive DNA in plant genomesMichele Morgante
E.I. DuPont de Nemours and Co, DuPont Agriculture and Nutrition-Molecular Genetics, Newark, Delaware, USA
Nat Genet 30:194-200. 2002..Contrary to previous reports suggesting a preferential mechanism for the origin of microsatellites from repetitive DNA in both animals and plants, our findings show a significant association with the low-copy fraction of plant genomes... - Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase lociKelly A Palaisa
Department of Plant and Soil Sciences, University of Delaware, and Delaware Biotechnology Institute, Newark, DE 19716, USA
Plant Cell 15:1795-806. 2003..We propose that two independent gain-of-function events associated with insertions into the promoter of the Y1 gene and upregulation of expression in endosperm have been incorporated into yellow maize... - Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutantStefan Hoth
Laboratory of Plant Molecular Biology, The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA
J Cell Sci 115:4891-900. 2002..However, a subset of genes continued to be appropriately regulated by ABA, which suggests the presence of at least two ABA signaling pathways, only one of which is blocked in abi1-1... - Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweepKelly Palaisa
DuPont Crop Genetics, Molecular Genetics Group, 1 Innovation Way, Newark, DE 19711, USA
Proc Natl Acad Sci U S A 101:9885-90. 2004..The starch branching enzyme 1 (sbe1) gene is the first region downstream of Y1 that does not have a highly conserved haplotype in the yellow endosperm germplasm... - SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred linesAda Ching
DuPont Crop Genetics, Delaware Technology Park, Suite 200, P, O, Box 6104, Newark, Delaware 19714, USA
BMC Genet 3:19. 2002..Such population events are expected to increase the amount of linkage disequilibrium, but reduce diversity. The results of this study will inform the design of genetic association studies... - Evolution of DNA sequence nonhomologies among maize inbredsStephan Brunner
DuPont Crop Genetics Research, Wilmington, Delaware 19880, USA
Plant Cell 17:343-60. 2005..The intergenic space between conserved genes is enlarged up to sixfold in maize compared with rice. Frequently, retroelement insertions create a different sequence environment adjacent to conserved genes... - Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst]Myriam Heuertz
Program in Evolutionary Functional Genetics, Evolutionary Biology Centre, Uppsala University, Sweden
Genetics 174:2095-105. 2006..Hence, demographic departures from equilibrium expectations and population structure will have to be accounted for when detecting selection at candidate genes and in association mapping studies, respectively... - TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomesBlake C Meyers
Department of Vegetable Crops, University of California, Davis, CA 95616, USA
Plant J 32:77-92. 2002..These TX and TN proteins could be plant analogues of small TIR-adapter proteins that function in mammalian innate immune responses such as MyD88 and Mal... - Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maizeSilvio Salvi
Department of Agroenvironmental Science and Technology, University of Bologna, Viale Fanin, 44, 40127 Bologna, Italy
Proc Natl Acad Sci U S A 104:11376-81. 2007..Our results support the notion that changes in distant cis-acting regulatory regions are a key component of plant genetic adaptation throughout breeding and evolution... - Comparative genomic mapping between a 754 kb region flanking DREB1A in Arabidopsis thaliana and maizeMarianne L van Buuren
Department of Agroenvironmental Science and Technology, University of Bologna, Italy
Plant Mol Biol 48:741-50. 2002.... - Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thalianaStefan Hoth
Laboratory of Plant Molecular Biology, The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA
FEBS Lett 554:373-80. 2003..Our study provides researchers with the opportunity to rapidly assess whether genes of interest are regulated by cytokinins... - Corn and humans: recombination and linkage disequilibrium in two genomes of similar sizeAntoni Rafalski
DuPont Crop Genetics, Experimental Station E353, PO Box 80353, Wilmington DE 19880 0353, USA
Trends Genet 20:103-11. 2004.... - Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridizationJack Gardiner
Department of Agronomy, University of Missouri, Columbia, Missouri 65211, USA
Plant Physiol 134:1317-26. 2004..Our results indicate overgos are a powerful approach for generating gene-specific hybridization probes that are facilitating the assembly of an integrated genetic and physical map for maize... - Mapping and sequencing complex genomes: let's get physical!Blake C Meyers
Department of Plant and Soil Sciences and Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711, USA
Nat Rev Genet 5:578-88. 2004 - Classical genetic and quantitative trait loci analyses of heterosis in a maize hybrid between two elite inbred linesElisabetta Frascaroli
Department of Agroenvironmental Sciences and Technologies, University of Bologna, 40127 Bologna, Italy
Genetics 176:625-44. 2007..Some chromosome regions presented overlaps of overdominant QTL for SW, PH, NK, and GY, suggesting pleiotropic effects on overall plant vigor... - A unified classification system for eukaryotic transposable elementsThomas Wicker
Institute of Plant Biology, University Zurich, Zollikerstrasse 107, Ch 8008 Zurich, Switzerland
Nat Rev Genet 8:973-82. 2007..The system and nomenclature is kept up to date at the WikiPoson web site... - A dense single-nucleotide polymorphism-based genetic linkage map of grapevine (Vitis vinifera L.) anchoring Pinot Noir bacterial artificial chromosome contigsMichela Troggio
IASMA Research Center, Via E Mach 1, 38010 San Michele all Adige TN, Italy
Genetics 176:2637-50. 2007..The map provides the most comprehensive view of the Vitis genome reported to date and will be relevant for future studies on structural and functional genomics and genetic improvement...